Rw7G031010
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000244
Physical Location & Seq
Forward (+)
44159124 .. 44160563
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031010.1

Sequence Viewer

Length: 855 bp
ATGGGGCATGCTTTGGCTGACATACTTGGTGAGGAAAGAGGCTTAGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAACTTATAATACAGTTGCTGATATTTTATCTGCACAATTTGATATTCATATAATTGCTGACAATATAAAAAATCGTGTGAAGTCATGGAAAACGTATTATGGAACTGTAAGTGATATCTTGAGCCAAAGTGGATTTAGTTGGGATTCCTCAACACAAATGATAATTGTCGATGAAAACAATATATGGGAAGAATATGTGAAGGTATTTGAAAGCTTTTGGTTTAAAAGAATCCCAAATTGGGATTATATGGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAAGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATGGTCACATTGATTTGGATAACCAAGCATCAGAAGATATTCACATTATTGAAGACATTTCACCCAACCAAGCAAGCTCTCAGAAAAAAAAAAATGAAGCTACAGTCTCTTCTAGTGTACCTCCTCCAAAGCGAAGAGTTACAACTAAAGATTTCTTGGGTACTTCGGTGGACAGAATGGCTTTATATTTTCAAGAACTCATCTGTGCTACTACAAAAAGTCTTGCCCCAAAAGATGTGGCTGCCCAGCAAGTATTGTCCACAGAAATAATGGCAATACCATATCTTTCTAGACAAGAACAAATAAAAGCATGTGCTTGGTTTATAGAGAACGACAAACAATTTCTTATGTTGAAGGAAGTCTCAGTGGAAATGAAAAAAAACATGGTGTTGATGTTTAATTCAGATGGATCTACATTGGATATCTTATTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

284

Amino Acids

31.92

Weight (kDa)

4.81

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 3 - 91 5.7e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AclWI GGATC 1 cut(s) 835
AfaI GTAC 2 cut(s) 537, 580
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 287, 470, 611, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 4 cut(s) 74, 291, 495, 518
AluI AGCT 4 cut(s) 74, 291, 495, 518
Alw26I GTCTC 2 cut(s) 529, 784
AlwI GGATC 1 cut(s) 835
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 659
Asp700I GAANNNNTTC 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 41, 471
AsuII TTCGAA 1 cut(s) 381
BaeI ACNNNNGTAYC 2 cut(s) 570, 603
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 646
BccI CCATC 2 cut(s) 413, 818
BcoDI GTCTC 2 cut(s) 529, 784
BfaI CTAG 2 cut(s) 531, 708
BfmI CTRYAG 1 cut(s) 519
BisI GCNGC 1 cut(s) 660
BlsI GCNGC 1 cut(s) 661
BmsI GCATC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 3 cut(s) 381, 512, 795
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 393, 531
BseXI GCAGC 1 cut(s) 646
BseYI CCCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 529, 784
BsnI GGCC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 381
Bsp143I GATC 1 cut(s) 827
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 3 cut(s) 382, 511, 794
BspPI GGATC 1 cut(s) 835
BspT104I TTCGAA 1 cut(s) 381
BsrI ACTGG 1 cut(s) 361
BssMI GATC 1 cut(s) 827
Bst4CI ACNGT 3 cut(s) 91, 184, 523
Bst6I CTCTTC 2 cut(s) 532, 547
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 9, 493
BstDEI CTNAG 4 cut(s) 43, 390, 498, 781
BstKTI GATC 1 cut(s) 830
BstMAI GTCTC 2 cut(s) 529, 784
BstMBI GATC 1 cut(s) 827
BstNSI RCATGY 2 cut(s) 11, 732
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 827
BstYI RGATCY 1 cut(s) 827
BsuRI GGCC 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 354, 387, 789
Cac8I GCNNGC 2 cut(s) 9, 493
CaiI CAGNNNCTG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 536, 579
CspCI CAANNNNNGTGG 2 cut(s) 636, 671
CviAII CATG 5 cut(s) 8, 162, 729, 802, 852
CviQI GTAC 2 cut(s) 536, 579
DdeI CTNAG 4 cut(s) 43, 390, 498, 781
DpnI GATC 1 cut(s) 829
DpnII GATC 1 cut(s) 827
DraI TTTAAA 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 532, 547
EarI CTCTTC 2 cut(s) 532, 547
Eco32I GATATC 2 cut(s) 193, 841
EcoRV GATATC 2 cut(s) 193, 841
FaeI CATG 5 cut(s) 11, 165, 732, 805, 855
FatI CATG 5 cut(s) 7, 161, 728, 801, 851
Fnu4HI GCNGC 1 cut(s) 660
Fsp4HI GCNGC 1 cut(s) 660
FspBI CTAG 2 cut(s) 531, 708
GluI GCNGC 1 cut(s) 660
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 1 cut(s) 48
Hin1II CATG 5 cut(s) 11, 165, 732, 805, 855
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 3 cut(s) 221, 306, 400
HphI GGTGA 2 cut(s) 41, 471
Hpy166II GTNNAC 3 cut(s) 536, 589, 678
Hpy188I TCNGA 3 cut(s) 451, 501, 823
Hpy188III TCNNGA 3 cut(s) 196, 611, 708
Hpy8I GTNNAC 3 cut(s) 536, 589, 678
HpyAV CCTTC 2 cut(s) 271, 766
HpyCH4III ACNGT 3 cut(s) 91, 184, 523
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 110
HpyF3I CTNAG 4 cut(s) 43, 390, 498, 781
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 5 cut(s) 11, 165, 732, 805, 855
Kzo9I GATC 1 cut(s) 827
LpnPI CCDG 3 cut(s) 342, 420, 677
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 1 cut(s) 455
MaeI CTAG 2 cut(s) 531, 708
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 76, 422, 556
MalI GATC 1 cut(s) 829
MboI GATC 1 cut(s) 827
MboII GAAGA 6 cut(s) 278, 428, 464, 482, 519, 564
MflI RGATCY 1 cut(s) 827
MluCI AATT 6 cut(s) 113, 129, 240, 313, 758, 817
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 8 cut(s) 25, 32, 235, 355, 385, 414, 549, 552
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 2 cut(s) 300, 816
NdeII GATC 1 cut(s) 827
NlaIII CATG 5 cut(s) 11, 165, 732, 805, 855
NmuCI GTSAC 1 cut(s) 422
NspI RCATGY 2 cut(s) 11, 732
NspV TTCGAA 1 cut(s) 381
PaeI GCATGC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 221, 306
PkrI GCNGC 1 cut(s) 661
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PsiI TTATAA 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 663
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 827
RsaI GTAC 2 cut(s) 537, 580
RsaNI GTAC 2 cut(s) 536, 579
SaqAI TTAA 2 cut(s) 300, 816
SatI GCNGC 1 cut(s) 660
Sau3AI GATC 1 cut(s) 827
SchI GAGTC 1 cut(s) 394
SetI ASST 8 cut(s) 76, 173, 282, 293, 396, 497, 520, 541
SfaNI GCATC 1 cut(s) 455
SfcI CTRYAG 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SphI GCATGC 1 cut(s) 11
Sse9I AATT 6 cut(s) 113, 129, 240, 313, 758, 817
SspMI CTAG 2 cut(s) 531, 708
TaaI ACNGT 3 cut(s) 91, 184, 523
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 246, 381
TasI AATT 6 cut(s) 113, 129, 240, 313, 758, 817
TfiI GAWTC 2 cut(s) 221, 306
Tru1I TTAA 2 cut(s) 300, 816
Tru9I TTAA 2 cut(s) 300, 816
TscAI CASTG 3 cut(s) 361, 394, 789
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 5 cut(s) 113, 264, 429, 528, 806
TspRI CASTG 3 cut(s) 361, 394, 789
XbaI TCTAGA 1 cut(s) 707
XceI RCATGY 2 cut(s) 11, 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 2 cut(s) 531, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.