Rmu_sc0003482.1_g000004
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003482.1
OG0000244
Physical Location & Seq
Forward (+)
29292 .. 30462
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003482.1_g000004.1.cds

Sequence Viewer

Length: 531 bp
atgatcaggaggaagaggacattccaaaaacgtgaagaaatccgccagaaattcaccggagcacgcggaactgatcaggtcccggttgtgcgtctggggtccgtgaccggaggacgcgggacagagccagaaaacactggtcgggtcgacggaaaccttttaacgcaagctagaaaaggaaaggataagaagcaaaagagtatgaaaaaggatgatgatggaggcaaatacttgcattggaatccggaaatggattgttcattggccaatattcttaaaagtgagagacaacctggccataaaagtaatggtgggtggaaaactgaagcatttacttcggctgcattgaagatgtcaaccaactataatgtaactatgatgaaggataatgtgaagaatcacctcaaatgttggaaaaggacttatggagtagtttctaatatcctaaaccaaagtgactttaattgggataatgggcgtatgaagataacaatggatgatgacaatgtatggaatgaatatagtggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

176

Amino Acids

20.13

Weight (kDa)

9.79

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 66, 117
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 3 cut(s) 43, 66, 117
AcoI YGGCCR 2 cut(s) 264, 295
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 345
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 2 cut(s) 264, 295
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 79, 99
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 46, 392
AvaII GGWCC 2 cut(s) 79, 99
BalI TGGCCA 2 cut(s) 266, 297
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 2 cut(s) 3, 73
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 171
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 83, 294
Bme18I GGWCC 2 cut(s) 79, 99
BmgT120I GGNCC 2 cut(s) 79, 99
BmiI GGNNCC 2 cut(s) 81, 100
BmrFI CCNGG 2 cut(s) 83, 294
BpuMI CCSGG 1 cut(s) 83
BsaWI WCCGGW 3 cut(s) 56, 107, 244
Bse1I ACTGG 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 217, 502
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 66, 117
BshFI GGCC 2 cut(s) 266, 297
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 4 cut(s) 57, 83, 108, 245
BslFI GGGAC 2 cut(s) 65, 133
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 65, 133
BsnI GGCC 2 cut(s) 266, 297
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 2 cut(s) 3, 73
BspACI CCGC 3 cut(s) 43, 66, 117
BspANI GGCC 2 cut(s) 266, 297
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 2 cut(s) 66, 117
BspLI GGNNCC 2 cut(s) 81, 100
BsrI ACTGG 1 cut(s) 142
BssMI GATC 2 cut(s) 3, 73
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 64, 168
BstF5I GGATG 2 cut(s) 217, 502
BstFNI CGCG 2 cut(s) 66, 117
BstKTI GATC 2 cut(s) 6, 76
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 3, 73
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 81, 292
BstUI CGCG 2 cut(s) 66, 117
BstV1I GCAGC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 266, 297
BtsCI GGATG 2 cut(s) 217, 502
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 64, 168
Cfr13I GGNCC 2 cut(s) 79, 99
CseI GACGC 2 cut(s) 80, 123
CviJI RGCY 5 cut(s) 127, 170, 266, 297, 341
CviKI_1 RGCY 5 cut(s) 127, 170, 266, 297, 341
DpnI GATC 2 cut(s) 5, 75
DpnII GATC 2 cut(s) 3, 73
EaeI YGGCCR 2 cut(s) 264, 295
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 79, 99
Eco57I CTGAAG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 292
FaiI YATR 8 cut(s) 203, 300, 366, 377, 426, 482, 511, 522
FaqI GGGAC 2 cut(s) 65, 133
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 2 cut(s) 3, 73
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 2 cut(s) 224, 509
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 266, 297
HapII CCGG 4 cut(s) 57, 83, 108, 245
HgaI GACGC 2 cut(s) 80, 123
HincII GTYRAC 2 cut(s) 148, 357
HindII GTYRAC 2 cut(s) 148, 357
HinfI GANTC 2 cut(s) 241, 397
HpaII CCGG 4 cut(s) 57, 83, 108, 245
HphI GGTGA 2 cut(s) 46, 392
Hpy166II GTNNAC 2 cut(s) 148, 357
Hpy188III TCNNGA 2 cut(s) 7, 245
Hpy8I GTNNAC 2 cut(s) 148, 357
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 235, 344
HpySE526I ACGT 1 cut(s) 31
Kpn2I TCCGGA 1 cut(s) 244
Ksp22I TGATCA 2 cut(s) 3, 73
Kzo9I GATC 2 cut(s) 3, 73
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 3 cut(s) 103, 370, 455
MalI GATC 2 cut(s) 5, 75
MboI GATC 2 cut(s) 3, 73
MboII GAAGA 5 cut(s) 25, 47, 361, 406, 496
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 2 cut(s) 266, 297
MluCI AATT 2 cut(s) 50, 463
MluNI TGGCCA 2 cut(s) 266, 297
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 3, 9, 104, 215, 413
Mox20I TGGCCA 2 cut(s) 266, 297
MroI TCCGGA 1 cut(s) 244
MscI TGGCCA 2 cut(s) 266, 297
MseI TTAA 3 cut(s) 161, 276, 462
Msp20I TGGCCA 2 cut(s) 266, 297
MspI CCGG 4 cut(s) 57, 83, 108, 245
MspR9I CCNGG 2 cut(s) 83, 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 2 cut(s) 66, 117
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 3, 73
NlaIV GGNNCC 2 cut(s) 81, 100
NmuCI GTSAC 2 cut(s) 103, 455
PfeI GAWTC 2 cut(s) 241, 397
PkrI GCNGC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 81, 100
PspPI GGNCC 2 cut(s) 79, 99
PspPPI RGGWCCY 1 cut(s) 79
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 161, 276, 462
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 3, 73
Sau96I GGNCC 2 cut(s) 79, 99
ScrFI CCNGG 2 cut(s) 83, 294
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 34, 81, 159, 172, 295, 405
SinI GGWCC 2 cut(s) 79, 99
Sse9I AATT 2 cut(s) 50, 463
SsiI CCGC 3 cut(s) 43, 66, 117
SspI AATATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 81, 292
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 50, 463
TfiI GAWTC 2 cut(s) 241, 397
Tru1I TTAA 3 cut(s) 161, 276, 462
Tru9I TTAA 3 cut(s) 161, 276, 462
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 103, 455
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 2 cut(s) 103, 455
TspDTI ATGAA 5 cut(s) 218, 249, 395, 497, 531
TspGWI ACGGA 2 cut(s) 91, 165
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 2 cut(s) 79, 99
XapI RAATTY 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.