RchiOBHm_Chr4g0417571
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000244
Physical Location & Seq
Reverse (-)
42887446 .. 42890119
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38765

Sequence Viewer

Length: 489 bp
ATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCACACATGCAGCAACTTCGACTTGTGAATCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACCTTGAAAGAGTTTGTGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAACCTCAGCAAATTGCAAGTCTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTACTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAGAATGCTCATATGGCAATCTGAAGGGCGACCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

162

Amino Acids

17.83

Weight (kDa)

4.59

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 215, 228
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 3 cut(s) 71, 113, 398
AcuI CTGAAG 4 cut(s) 78, 120, 431, 489
AfaI GTAC 2 cut(s) 312, 369
AgsI TTSAA 4 cut(s) 77, 119, 262, 361
AluBI AGCT 3 cut(s) 23, 278, 365
AluI AGCT 3 cut(s) 23, 278, 365
Alw26I GTCTC 2 cut(s) 289, 420
AlwI GGATC 2 cut(s) 215, 228
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 2 cut(s) 170, 275
ApoI RAATTY 3 cut(s) 71, 113, 398
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
AsuHPI GGTGA 2 cut(s) 41, 254
BalI TGGCCA 1 cut(s) 251
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 349
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 182, 287
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BcoDI GTCTC 2 cut(s) 289, 420
BfaI CTAG 1 cut(s) 227
BisI GCNGC 2 cut(s) 171, 276
BlsI GCNGC 2 cut(s) 172, 277
BmiI GGNNCC 1 cut(s) 222
BmsI GCATC 3 cut(s) 43, 85, 415
BpiI GAAGAC 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse1I ACTGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 193, 313
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 182, 287
BshFI GGCC 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 289, 420
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 215, 228
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 31
BssMI GATC 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 341
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 2 cut(s) 193, 313
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 289, 420
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 2 cut(s) 167, 460
BstNSI RCATGY 2 cut(s) 161, 170
BstPI GGTNACC 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 182, 287
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 193, 313
Csp6I GTAC 2 cut(s) 311, 368
CviAII CATG 3 cut(s) 158, 167, 314
CviJI RGCY 4 cut(s) 23, 251, 278, 365
CviKI_1 RGCY 4 cut(s) 23, 251, 278, 365
CviQI GTAC 2 cut(s) 311, 368
DdeI CTNAG 1 cut(s) 341
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 249
Eco57I CTGAAG 4 cut(s) 78, 120, 431, 489
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
FaeI CATG 3 cut(s) 161, 170, 317
FaiI YATR 9 cut(s) 7, 68, 110, 159, 168, 315, 374, 458, 460
FatI CATG 3 cut(s) 157, 166, 313
FauNDI CATATG 1 cut(s) 458
Fnu4HI GCNGC 2 cut(s) 171, 276
FokI GGATG 2 cut(s) 180, 320
Fsp4HI GCNGC 2 cut(s) 171, 276
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 171, 276
HaeIII GGCC 1 cut(s) 251
Hin1II CATG 3 cut(s) 161, 170, 317
HinfI GANTC 2 cut(s) 145, 188
HphI GGTGA 2 cut(s) 41, 254
Hpy188I TCNGA 1 cut(s) 469
HpyAV CCTTC 2 cut(s) 26, 464
HpyCH4V TGCA 2 cut(s) 170, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 460
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 3 cut(s) 161, 170, 317
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 1 cut(s) 12
Lsp1109I GCAGC 2 cut(s) 182, 287
LweI GCATC 3 cut(s) 43, 85, 415
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 142, 386
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 8 cut(s) 53, 71, 95, 113, 137, 140, 349, 407
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 7 cut(s) 71, 113, 151, 237, 347, 398, 484
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 28, 70
MnlI CCTC 4 cut(s) 6, 207, 298, 350
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 251
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 456
MwoI GCNNNNNNNGC 2 cut(s) 167, 460
NdeI CATATG 1 cut(s) 458
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 161, 170, 317
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 2 cut(s) 161, 170
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 172, 277
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 2 cut(s) 312, 369
RsaNI GTAC 2 cut(s) 311, 368
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 171, 276
Sau3AI GATC 1 cut(s) 220
SchI GAGTC 1 cut(s) 139
SetI ASST 5 cut(s) 25, 260, 280, 342, 367
SfaNI GCATC 3 cut(s) 43, 85, 415
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 7 cut(s) 71, 113, 151, 237, 347, 398, 484
SspMI CTAG 1 cut(s) 227
TaqI TCGA 1 cut(s) 179
TasI AATT 7 cut(s) 71, 113, 151, 237, 347, 398, 484
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 170, 275
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 147, 330
XapI RAATTY 3 cut(s) 71, 113, 398
XceI RCATGY 2 cut(s) 161, 170
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.