MD07G1041200.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000244
Physical Location & Seq
Reverse (-)
3431147 .. 3434006
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1041200.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGATAAGTGTTTAATTGATTCCCTTGCTATTCAAGCTAGGCATGGAAACAAAATTGACAAGAGCTTTAATGAACATGCTTACACTGCTGCTTGTATTGCAGTGAACTCTCGTTTCAACTTGAATTTAAACAATCAAAAGGTCATTAATCGTCTTAAGACCATAAAGAAGAGGTATAAGGCAATGAAGGATATCCTGAGTCAAGATGGTTTCAGGTGGAATCCCACTACAAAGATGATCGAGTGTGACAATCACGAACTTTGGAAGAGATACATTGCAGCACATCCTGATGCAAAGGGGTTTCGAGGCAAGCCAATAGAGATGTATGATGAACTCAAAATTGTTTGTGGAAACTATCAAGTCCCTAGTCGCTGGGCTAAGATGAAGGATGGAGGCCATCCAAGTGAGATGAAGAATTGTGAAGATGATTCTGCCTCATTTCTTTCTCCAAGCTCAGATGACCTAAGTGAGACAGATGGAACTGAGACATATAGTGAACCAGAAGAAGGGTATAACAAGGTGCCAGATGGTATTCAAGACCCCCCTCTGATCCAGCCACTTAGACAACTTCCGAAACGCCCTCGTGGCTCAGAAGCCCTTCAGGATGCAATGATGGCTGTGGCGTCAAGCATTCGTCTCTTGGCTGATGCTATGGAGCAAAGCAAATACTCAATTGACGCCTCTCAACTACTAGAGGCTGTGATGGAGATTGATGGTTTGGAAGAGGCTAAACAGATGTATGCATTTGAGTATTTGAATGCTGACCCTGTCAAAGCGCGAGCCTTCATGGCATACGATGCTCGGATGAGGAAAATATACTTGTTTAGACAGTTCTGGTGGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

283

Amino Acids

32.44

Weight (kDa)

6.55

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 91 3.3e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccII CGCG 1 cut(s) 778
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 2 cut(s) 623, 678
AfiI CCNNNNNNNGG 1 cut(s) 506
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 5 cut(s) 35, 118, 124, 536, 757
AluBI AGCT 3 cut(s) 38, 66, 453
AluI AGCT 3 cut(s) 38, 66, 453
Alw26I GTCTC 3 cut(s) 464, 479, 641
AlwI GGATC 1 cut(s) 544
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 89, 278
ApoI RAATTY 1 cut(s) 124
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 520
BauI CACGAG 1 cut(s) 582
BbvI GCAGC 2 cut(s) 76, 290
BccI CCATC 8 cut(s) 200, 383, 405, 470, 521, 607, 697, 707
BcoDI GTCTC 3 cut(s) 464, 479, 641
BfaI CTAG 3 cut(s) 39, 366, 692
BfrI CTTAAG 1 cut(s) 155
BglI GCCNNNNNGGC 2 cut(s) 585, 788
BisI GCNGC 2 cut(s) 90, 279
BlsI GCNGC 2 cut(s) 91, 280
BmiI GGNNCC 1 cut(s) 522
BmsI GCATC 4 cut(s) 280, 595, 637, 787
BsaHI GRCGYC 2 cut(s) 623, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse3DI GCAATG 3 cut(s) 189, 273, 615
BseGI GGATG 5 cut(s) 283, 394, 397, 610, 810
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 3 cut(s) 189, 273, 615
BseMII CTCAG 4 cut(s) 188, 468, 474, 603
BseXI GCAGC 2 cut(s) 76, 290
BseYI CCCAGC 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 520
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 3 cut(s) 464, 479, 641
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 2 cut(s) 630, 763
BsnI GGCC 1 cut(s) 396
Bsp143I GATC 2 cut(s) 237, 549
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 4 cut(s) 189, 467, 475, 602
BspFNI CGCG 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 1 cut(s) 544
BspT107I GGYRCC 1 cut(s) 520
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 3 cut(s) 189, 273, 615
BssMI GATC 2 cut(s) 237, 549
BssNI GRCGYC 2 cut(s) 623, 678
BssSI CACGAG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 3 cut(s) 164, 260, 717
BstACI GRCGYC 2 cut(s) 623, 678
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 2 cut(s) 311, 780
BstDEI CTNAG 7 cut(s) 197, 378, 454, 464, 483, 560, 589
BstF5I GGATG 5 cut(s) 283, 394, 397, 610, 810
BstFNI CGCG 1 cut(s) 778
BstHHI GCGC 1 cut(s) 778
BstKTI GATC 2 cut(s) 240, 552
BstMAI GTCTC 3 cut(s) 464, 479, 641
BstMBI GATC 2 cut(s) 237, 549
BstMWI GCNNNNNNNGC 7 cut(s) 35, 86, 98, 585, 614, 788, 797
BstNSI RCATGY 1 cut(s) 80
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 2 cut(s) 76, 290
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 5 cut(s) 283, 394, 397, 610, 810
BtsI GCAGTG 2 cut(s) 84, 108
BtsIMutI CAGTG 2 cut(s) 84, 108
Cac8I GCNNGC 2 cut(s) 311, 780
CfoI GCGC 1 cut(s) 778
CseI GACGC 2 cut(s) 612, 686
CviAII CATG 3 cut(s) 44, 77, 787
DdeI CTNAG 7 cut(s) 197, 378, 454, 464, 483, 560, 589
DpnI GATC 2 cut(s) 239, 551
DpnII GATC 2 cut(s) 237, 549
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 164, 260, 717
EarI CTCTTC 3 cut(s) 164, 260, 717
Eco32I GATATC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 584
EcoRV GATATC 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 745
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 3 cut(s) 47, 80, 790
FaqI GGGAC 1 cut(s) 347
FatI CATG 3 cut(s) 43, 76, 786
Fnu4HI GCNGC 2 cut(s) 90, 279
FokI GGATG 5 cut(s) 270, 384, 401, 617, 817
Fsp4HI GCNGC 2 cut(s) 90, 279
FspBI CTAG 3 cut(s) 39, 366, 692
GlaI GCGC 1 cut(s) 777
GluI GCNGC 2 cut(s) 90, 279
GsaI CCCAGC 1 cut(s) 376
HaeIII GGCC 1 cut(s) 396
HgaI GACGC 2 cut(s) 612, 686
HhaI GCGC 1 cut(s) 778
Hin1I GRCGYC 2 cut(s) 623, 678
Hin1II CATG 3 cut(s) 47, 80, 790
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HinfI GANTC 4 cut(s) 20, 199, 220, 428
Hpy166II GTNNAC 2 cut(s) 106, 497
Hpy188I TCNGA 5 cut(s) 457, 549, 573, 592, 804
Hpy188III TCNNGA 6 cut(s) 196, 203, 254, 287, 536, 602
Hpy8I GTNNAC 2 cut(s) 106, 497
HpyAV CCTTC 5 cut(s) 181, 379, 500, 608, 793
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4V TGCA 5 cut(s) 101, 278, 293, 608, 743
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 86, 98, 585, 614, 788, 797
HpyF3I CTNAG 7 cut(s) 197, 378, 454, 464, 483, 560, 589
Hsp92I GRCGYC 2 cut(s) 623, 678
Hsp92II CATG 3 cut(s) 47, 80, 790
HspAI GCGC 1 cut(s) 776
Kzo9I GATC 2 cut(s) 237, 549
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 2 cut(s) 76, 290
LweI GCATC 4 cut(s) 280, 595, 637, 787
MaeI CTAG 3 cut(s) 39, 366, 692
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 239, 551
MboI GATC 2 cut(s) 237, 549
MboII GAAGA 6 cut(s) 181, 277, 424, 434, 515, 734
MfeI CAATTG 1 cut(s) 672
MluCI AATT 6 cut(s) 15, 54, 124, 339, 415, 672
MlyI GAGTC 1 cut(s) 208
Mph1103I ATGCAT 1 cut(s) 745
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 5 cut(s) 14, 69, 128, 147, 156
MslI CAYNNNNRTG 2 cut(s) 288, 402
MspCI CTTAAG 1 cut(s) 155
MunI CAATTG 1 cut(s) 672
Mva1269I GAATGC 2 cut(s) 630, 763
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 7 cut(s) 35, 86, 98, 585, 614, 788, 797
NdeII GATC 2 cut(s) 237, 549
NlaIII CATG 3 cut(s) 47, 80, 790
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 1 cut(s) 80
PctI GAATGC 2 cut(s) 630, 763
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 3 cut(s) 20, 220, 428
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 2 cut(s) 91, 280
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 522
PsyI GACNNNGTC 1 cut(s) 767
RseI CAYNNNNRTG 2 cut(s) 288, 402
SaqAI TTAA 5 cut(s) 14, 69, 128, 147, 156
SatI GCNGC 2 cut(s) 90, 279
Sau3AI GATC 2 cut(s) 237, 549
SchI GAGTC 1 cut(s) 208
SetI ASST 8 cut(s) 40, 68, 144, 176, 218, 455, 465, 522
SfaNI GCATC 4 cut(s) 280, 595, 637, 787
SmiMI CAYNNNNRTG 2 cut(s) 288, 402
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 6 cut(s) 15, 54, 124, 339, 415, 672
SspMI CTAG 3 cut(s) 39, 366, 692
TaaI ACNGT 1 cut(s) 831
TaqI TCGA 2 cut(s) 240, 304
TasI AATT 6 cut(s) 15, 54, 124, 339, 415, 672
TfiI GAWTC 3 cut(s) 20, 220, 428
Tru1I TTAA 5 cut(s) 14, 69, 128, 147, 156
Tru9I TTAA 5 cut(s) 14, 69, 128, 147, 156
TscAI CASTG 2 cut(s) 91, 108
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 89, 278
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 6 cut(s) 87, 200, 345, 398, 425, 775
TspRI CASTG 2 cut(s) 91, 108
Tth111I GACNNNGTC 1 cut(s) 767
Vha464I CTTAAG 1 cut(s) 155
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 1 cut(s) 124
XceI RCATGY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 3 cut(s) 39, 366, 692
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.