Rorug07G0148200
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000244
Physical Location & Seq
Forward (+)
11742114 .. 11744272
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0148200.1

Sequence Viewer

Length: 1104 bp
ATGGAGAGCTCTAGCATGGAAGCAGAAGCTTTGGAGATATTTGAGGTTGGTCCTTGTGAAGATGCTTACACAATGGGCTACATGATAGGCCAGAGGTTTTCAAACAAGATAAAGAGCAGGTTGGCCAGAGACCTCATTCTTCAAGACCAGCTCCTCCCTTTTGCTCAGACCCCAGAGTCACAGCCACTCATTCAGTCTCTTACTGAAAATCACCGGAGCAAGTTTCCAAGGTATTGGGACGAGCTCGTAGGAACTGCAGAGGGAAGTGGTGTGCCAGTTCTTGAAATAATGCTGATCAACTTTAGGAAGGAGATTCTTCCATTTCTTCCAAAGACGGTGACGAATTGCGAAATAGATACCCCGGATGACTGCTCTGATGTTCTTGTTGCTAGTGATTCCATGGCAATTGTGGCTCACAATGAGGATGCAGATGTTGCTCTGGTTGGCCATACCTATTTGGTAAAGGGAACTCTGTCAAATGGGATATCATTCATTGCTTATACATATGCCGGAGAGCTCCCTAGCTGTGCATTCGGCCTCAACAGTCATGGCCTGGCATTTACGTTGAATTCGGTACCCCCATCTGAAAGTGAGATTGTTCCTGGAGGCATTGGGCGGAACTTTATTTCACGAGACCTGCTTGAAGCAAAGAGCATTATTGATGCATTATGTAGAATTGAATCAGCAGAAGTTTCTGCAGGACATAGTTACAATCTGATTGAGACAAGGACACGAAGAATTATCAATGTAGAAACTGCATCAAAGAACCGGGTTTCAGTTTATGAGGTTGGAGAAACACCATTCTTCCATGCAAACATGTATCTCCATCTCCAGGTTAATCAGGTACATGATGAAAATTCATTAACAAGGCAAAGGAAAGCAGCTATGCTACCTAAAGGCTCCAAAGAAGATGTCCTGTCACTTCTAGGAGATACAGACGAGCCAACATACCCCATCTACATGACAGGTCCAACGCTTTACACTCTATGCACAGCAGTGATAGACCTCGACGAACAAACCCTATCAATTGTTGAAGGAAACCCGAAAAAAGGTGAAATCTCTCACATCTTCTCTACGTGTTCAGAAGATTTCAAGATGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

367

Amino Acids

40.54

Weight (kDa)

4.76

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAT PF03417 132 - 349 4.9e-26 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
Acc36I ACCTGC 2 cut(s) 108, 645
Acc65I GGTACC 1 cut(s) 574
AccB1I GGYRCC 1 cut(s) 574
AciI CCGC 1 cut(s) 616
AcoI YGGCCR 2 cut(s) 123, 445
AcsI RAATTY 2 cut(s) 568, 856
AfaI GTAC 2 cut(s) 576, 846
AfiI CCNNNNNNNGG 2 cut(s) 832, 1049
AflIII ACRYGT 2 cut(s) 816, 1076
AgsI TTSAA 8 cut(s) 102, 143, 284, 568, 644, 680, 1034, 1093
AjnI CCWGG 3 cut(s) 552, 601, 831
AleI CACNNNNGTG 1 cut(s) 995
AluBI AGCT 7 cut(s) 9, 29, 151, 244, 517, 525, 884
AluI AGCT 7 cut(s) 9, 29, 151, 244, 517, 525, 884
Alw21I GWGCWC 3 cut(s) 11, 246, 519
Alw26I GTCTC 4 cut(s) 123, 201, 627, 716
AoxI GGCC 5 cut(s) 88, 123, 445, 535, 550
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 2 cut(s) 568, 856
ArsI GACNNNNNNTTYG 2 cut(s) 897, 929
Asp718I GGTACC 1 cut(s) 574
AspS9I GGNCC 2 cut(s) 50, 968
AsuC2I CCSGG 2 cut(s) 362, 770
AsuHPI GGTGA 3 cut(s) 203, 349, 1064
AvaII GGWCC 2 cut(s) 50, 968
BalI TGGCCA 2 cut(s) 125, 447
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 3 cut(s) 11, 246, 519
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 3 cut(s) 11, 246, 519
BbvI GCAGC 1 cut(s) 893
BccI CCATC 3 cut(s) 589, 834, 962
BciT130I CCWGG 3 cut(s) 554, 603, 833
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 2 cut(s) 362, 770
BcoDI GTCTC 4 cut(s) 123, 201, 627, 716
BfaI CTAG 4 cut(s) 12, 390, 522, 926
BfmI CTRYAG 2 cut(s) 255, 696
BfuAI ACCTGC 2 cut(s) 108, 645
BisI GCNGC 1 cut(s) 882
BlsI GCNGC 1 cut(s) 883
Bme1390I CCNGG 5 cut(s) 362, 554, 603, 770, 833
Bme18I GGWCC 2 cut(s) 50, 968
BmgT120I GGNCC 2 cut(s) 50, 968
BmiI GGNNCC 2 cut(s) 576, 901
BmrFI CCNGG 5 cut(s) 362, 554, 603, 770, 833
BmsI GCATC 5 cut(s) 52, 415, 652, 767, 1086
BpmI CTGGAG 2 cut(s) 624, 815
BpuMI CCSGG 2 cut(s) 362, 770
BsaAI YACGTR 1 cut(s) 1077
BsaI GGTCTC 2 cut(s) 123, 627
BsaJI CCNNGG 3 cut(s) 227, 360, 399
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 832, 1049
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 3 cut(s) 554, 603, 833
BseDI CCNNGG 3 cut(s) 227, 360, 399
BseGI GGATG 2 cut(s) 370, 430
BseLI CCNNNNNNNGG 2 cut(s) 832, 1049
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 893
BshFI GGCC 5 cut(s) 90, 125, 447, 537, 552
BshNI GGYRCC 1 cut(s) 574
BsiHKAI GWGCWC 3 cut(s) 11, 246, 519
BsiSI CCGG 4 cut(s) 214, 362, 510, 769
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 832, 1049
BsmAI GTCTC 4 cut(s) 123, 201, 627, 716
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 5 cut(s) 90, 125, 447, 537, 552
Bso31I GGTCTC 2 cut(s) 123, 627
Bsp1286I GDGCHC 3 cut(s) 11, 246, 519
Bsp143I GATC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 1 cut(s) 616
BspANI GGCC 5 cut(s) 90, 125, 447, 537, 552
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 576, 901
BspMAI CTGCAG 2 cut(s) 259, 700
BspMI ACCTGC 2 cut(s) 108, 645
BspT107I GGYRCC 1 cut(s) 574
BspTNI GGTCTC 2 cut(s) 123, 627
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 227, 360, 399
BssMI GATC 1 cut(s) 294
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 2 cut(s) 227, 399
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 3 cut(s) 554, 603, 833
Bst4CI ACNGT 2 cut(s) 337, 545
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 1077
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 370, 430
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 4 cut(s) 123, 201, 627, 716
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 410, 434
BstNI CCWGG 3 cut(s) 554, 603, 833
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 5 cut(s) 360, 552, 601, 768, 831
BstSFI CTRYAG 2 cut(s) 255, 696
BstV1I GCAGC 1 cut(s) 893
BstXI CCANNNNNNTGG 1 cut(s) 234
BsuRI GGCC 5 cut(s) 90, 125, 447, 537, 552
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 370, 430
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 1 cut(s) 1002
BveI ACCTGC 2 cut(s) 108, 645
Cfr13I GGNCC 2 cut(s) 50, 968
Csp6I GTAC 2 cut(s) 575, 845
CviAII CATG 8 cut(s) 16, 82, 400, 548, 809, 817, 848, 961
CviQI GTAC 2 cut(s) 575, 845
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 123, 445
EciI GGCGGA 1 cut(s) 631
Ecl136II GAGCTC 3 cut(s) 9, 244, 517
Eco130I CCWWGG 2 cut(s) 227, 399
Eco24I GRGCYC 3 cut(s) 11, 246, 519
Eco31I GGTCTC 2 cut(s) 123, 627
Eco32I GATATC 1 cut(s) 486
Eco47I GGWCC 2 cut(s) 50, 968
Eco53kI GAGCTC 3 cut(s) 9, 244, 517
EcoICRI GAGCTC 3 cut(s) 9, 244, 517
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 3 cut(s) 552, 601, 831
EcoRV GATATC 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 227, 399
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 3 cut(s) 11, 246, 519
ErhI CCWWGG 2 cut(s) 227, 399
FaeI CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
FaqI GGGAC 1 cut(s) 251
FatI CATG 8 cut(s) 15, 81, 399, 547, 808, 816, 847, 960
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 882
FokI GGATG 2 cut(s) 377, 437
FriOI GRGCYC 3 cut(s) 11, 246, 519
Fsp4HI GCNGC 1 cut(s) 882
FspBI CTAG 4 cut(s) 12, 390, 522, 926
GluI GCNGC 1 cut(s) 882
GsuI CTGGAG 2 cut(s) 624, 815
HaeIII GGCC 5 cut(s) 90, 125, 447, 537, 552
HapII CCGG 4 cut(s) 214, 362, 510, 769
Hin1II CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 4 cut(s) 176, 313, 395, 680
HpaII CCGG 4 cut(s) 214, 362, 510, 769
HphI GGTGA 3 cut(s) 203, 349, 1064
Hpy188I TCNGA 5 cut(s) 168, 376, 586, 717, 1084
Hpy188III TCNNGA 4 cut(s) 143, 281, 630, 1093
Hpy99I CGWCG 1 cut(s) 1013
HpyAV CCTTC 2 cut(s) 301, 1028
HpyCH4III ACNGT 2 cut(s) 337, 545
HpyCH4IV ACGT 2 cut(s) 563, 1076
HpyCH4V TGCA 8 cut(s) 257, 428, 530, 665, 698, 758, 812, 990
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 434
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 563, 1076
Hsp92II CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
KpnI GGTACC 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 4 cut(s) 156, 216, 522, 905
Lsp1109I GCAGC 1 cut(s) 893
LweI GCATC 5 cut(s) 52, 415, 652, 767, 1086
MaeI CTAG 4 cut(s) 12, 390, 522, 926
MaeII ACGT 2 cut(s) 563, 1076
MaeIII GTNAC 4 cut(s) 177, 337, 707, 918
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 9 cut(s) 71, 131, 308, 317, 747, 796, 920, 1060, 1097
MfeI CAATTG 2 cut(s) 405, 1026
MhlI GDGCHC 3 cut(s) 11, 246, 519
MlsI TGGCCA 2 cut(s) 125, 447
MluCI AATT 7 cut(s) 343, 405, 568, 675, 738, 856, 1026
MluNI TGGCCA 2 cut(s) 125, 447
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 769, 995
Mox20I TGGCCA 2 cut(s) 125, 447
Mph1103I ATGCAT 1 cut(s) 667
MscI TGGCCA 2 cut(s) 125, 447
MseI TTAA 2 cut(s) 837, 863
MslI CAYNNNNRTG 2 cut(s) 959, 995
Msp20I TGGCCA 2 cut(s) 125, 447
MspI CCGG 4 cut(s) 214, 362, 510, 769
MspR9I CCNGG 5 cut(s) 362, 554, 603, 770, 833
MunI CAATTG 2 cut(s) 405, 1026
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 3 cut(s) 554, 603, 833
MwoI GCNNNNNNNGC 2 cut(s) 410, 434
NciI CCSGG 2 cut(s) 362, 770
NcoI CCATGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 505
NdeII GATC 1 cut(s) 294
NlaIII CATG 8 cut(s) 19, 85, 403, 551, 812, 820, 851, 964
NlaIV GGNNCC 2 cut(s) 576, 901
NmuCI GTSAC 3 cut(s) 177, 337, 918
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 1 cut(s) 820
OliI CACNNNNGTG 1 cut(s) 995
PciI ACATGT 1 cut(s) 816
PctI GAATGC 1 cut(s) 530
PfeI GAWTC 3 cut(s) 313, 395, 680
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 1 cut(s) 883
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 1077
PscI ACATGT 1 cut(s) 816
Psp124BI GAGCTC 3 cut(s) 11, 246, 519
Psp6I CCWGG 3 cut(s) 552, 601, 831
PspGI CCWGG 3 cut(s) 552, 601, 831
PspN4I GGNNCC 2 cut(s) 576, 901
PspPI GGNCC 2 cut(s) 50, 968
PstI CTGCAG 2 cut(s) 259, 700
RsaI GTAC 2 cut(s) 576, 846
RsaNI GTAC 2 cut(s) 575, 845
RseI CAYNNNNRTG 2 cut(s) 959, 995
SacI GAGCTC 3 cut(s) 11, 246, 519
SaqAI TTAA 2 cut(s) 837, 863
SatI GCNGC 1 cut(s) 882
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 50, 968
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 5 cut(s) 362, 554, 603, 770, 833
SduI GDGCHC 3 cut(s) 11, 246, 519
SfaNI GCATC 5 cut(s) 52, 415, 652, 767, 1086
SfcI CTRYAG 2 cut(s) 255, 696
SinI GGWCC 2 cut(s) 50, 968
SmiMI CAYNNNNRTG 2 cut(s) 959, 995
Sse9I AATT 7 cut(s) 343, 405, 568, 675, 738, 856, 1026
SsiI CCGC 1 cut(s) 616
SspMI CTAG 4 cut(s) 12, 390, 522, 926
SstI GAGCTC 3 cut(s) 11, 246, 519
StyD4I CCNGG 5 cut(s) 360, 552, 601, 768, 831
StyI CCWWGG 2 cut(s) 227, 399
TaaI ACNGT 2 cut(s) 337, 545
TaiI ACGT 2 cut(s) 566, 1079
TaqI TCGA 1 cut(s) 1008
TasI AATT 7 cut(s) 343, 405, 568, 675, 738, 856, 1026
TfiI GAWTC 3 cut(s) 313, 395, 680
Tru1I TTAA 2 cut(s) 837, 863
Tru9I TTAA 2 cut(s) 837, 863
TscAI CASTG 1 cut(s) 1002
TseFI GTSAC 3 cut(s) 177, 337, 918
TseI GCWGC 1 cut(s) 881
Tsp45I GTSAC 3 cut(s) 177, 337, 918
TspDTI ATGAA 3 cut(s) 481, 849, 867
TspRI CASTG 1 cut(s) 1002
VpaK11BI GGWCC 2 cut(s) 50, 968
XapI RAATTY 2 cut(s) 568, 856
XceI RCATGY 1 cut(s) 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XspI CTAG 4 cut(s) 12, 390, 522, 926
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.