Rroxscaffold_2G00105280
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000244
Physical Location & Seq
Reverse (-)
28685057 .. 28686889
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105280.1

Sequence Viewer

Length: 1008 bp
ATGAGAAGAACTGAAAAACGGCGGTTGTCTCTTACCCAAATTACTTCTCAGTCACAATCTCAGATGAAAGGTAAGTCAGGGCCATATATCTTATGGAACAAAGAAATGGATGCTGCATTGGCTAAAGCGTTGATTGACCAAATGAAGCAAGGTAATAAGGTTGGTGGACAGTGGACAAGACATGCCATTCCAGCAGTTGTGCATGAGTTAAATATGACTTTAGATCTTGGTTTGACAAAAGACAATGTGAAGAATAGACTTAAGGCTTGGAAGAGACATTGTGCCATTATTTCTGATAACAAGAATCAAAGTCAGCTTATGTGGGATGAAGGTAGGAAGATGGTTGTTATCAGATCAGAAAATCTAGAAGCTTGGAATGATTATGTTGAGTCACATCCTCTTGCATGTGGCTATCAAAACAAATTCATCAATAATTGGGATGACATTGCATTGCTATGTGGGAAGGATAAGACAACAGTTGAAGCTGCAGAGAATATTGAAGATGTTGAAGGAGTAATGGGAGTTGAAAAGGAAAATGGAGCCAATTTCATCTCTAATTCCCGTAGTCTTACACATCCTTCAGCTTCAACTTCGGAATCACATCCACTGATGAAGAAAGCCAAGAAACATTCGTGGAGGGTTGAAGAAGAAAATGAAGTCAATTCCATTTCTAATTCACATAGCTCAACACATCCTTCAGCATCAACTTCTAACTTGCATCCGAAGAAGAAAGCAAAGGAAGTGAAGAAAGATCTCTTGGCAGATGCAATTGGTGAGATGACGACTTCACTAAAGGAGTATTTGGCAAGCAAGATGGACCTGAATAGATCCCATCCCAAAGGTGAAGAAGTATATGAAGTGGTTTCAAAGGTACCAGGGCTCAATAGATTGCAGGTTTTTAAGGCTATACGAGTATTACTGAATGGTAACCCAGAAGAATTCTTTCTATTGAAATATCTTCCTGATGCTGAGAAGACAGAGTGGCTATATCTTATTAGTCATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

335

Amino Acids

37.95

Weight (kDa)

8.86

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 32 - 128 1.6e-12 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 883
Acc65I GGTACC 1 cut(s) 871
AccB1I GGYRCC 1 cut(s) 871
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 822
AcsI RAATTY 2 cut(s) 422, 938
AcuI CTGAAG 2 cut(s) 564, 681
AfaI GTAC 1 cut(s) 873
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 8 cut(s) 482, 500, 509, 527, 588, 644, 867, 952
AjnI CCWGG 1 cut(s) 874
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 5 cut(s) 316, 371, 485, 584, 684
AluI AGCT 5 cut(s) 316, 371, 485, 584, 684
Alw26I GTCTC 2 cut(s) 33, 268
AlwI GGATC 1 cut(s) 822
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 113, 485
ApoI RAATTY 2 cut(s) 422, 938
Asp700I GAANNNNTTC 1 cut(s) 942
Asp718I GGTACC 1 cut(s) 871
AspS9I GGNCC 2 cut(s) 80, 817
AsuHPI GGTGA 2 cut(s) 785, 854
AvaII GGWCC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 882
BbsI GAAGAC 1 cut(s) 980
BbvI GCAGC 2 cut(s) 100, 472
BccI CCATC 3 cut(s) 334, 808, 840
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 876
BcoDI GTCTC 2 cut(s) 33, 268
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 883
BglII AGATCT 2 cut(s) 223, 751
BisI GCNGC 2 cut(s) 114, 486
BlsI GCNGC 2 cut(s) 115, 487
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 1 cut(s) 817
BmgT120I GGNCC 2 cut(s) 80, 817
BmiI GGNNCC 2 cut(s) 541, 873
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 5 cut(s) 100, 710, 727, 754, 955
BpiI GAAGAC 1 cut(s) 980
BsaJI CCNNGG 1 cut(s) 875
Bse3DI GCAATG 2 cut(s) 444, 449
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 1 cut(s) 875
BseGI GGATG 9 cut(s) 115, 331, 394, 445, 574, 601, 691, 718, 832
BseMI GCAATG 2 cut(s) 444, 449
BseMII CTCAG 3 cut(s) 62, 74, 960
BseXI GCAGC 2 cut(s) 100, 472
BshFI GGCC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 871
BsmAI GTCTC 2 cut(s) 33, 268
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 882
Bsp143I GATC 4 cut(s) 223, 353, 751, 827
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 3 cut(s) 61, 73, 961
BspLI GGNNCC 2 cut(s) 541, 873
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 1 cut(s) 822
BspT107I GGYRCC 1 cut(s) 871
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 444, 449
BssECI CCNNGG 1 cut(s) 875
BssMI GATC 4 cut(s) 223, 353, 751, 827
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 2 cut(s) 171, 478
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 808
BstDEI CTNAG 3 cut(s) 48, 60, 969
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 9 cut(s) 115, 331, 394, 445, 574, 601, 691, 718, 832
BstKTI GATC 4 cut(s) 226, 356, 754, 830
BstMAI GTCTC 2 cut(s) 33, 268
BstMBI GATC 4 cut(s) 223, 353, 751, 827
BstMWI GCNNNNNNNGC 2 cut(s) 119, 191
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 2 cut(s) 185, 408
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 1 cut(s) 874
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 100, 472
BstV2I GAAGAC 1 cut(s) 980
BstX2I RGATCY 3 cut(s) 223, 751, 827
BstYI RGATCY 3 cut(s) 223, 751, 827
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 9 cut(s) 115, 331, 394, 445, 574, 601, 691, 718, 832
BtsIMutI CAGTG 2 cut(s) 176, 605
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 1 cut(s) 808
Cfr13I GGNCC 2 cut(s) 80, 817
Csp6I GTAC 1 cut(s) 872
CviAII CATG 3 cut(s) 182, 203, 405
CviQI GTAC 1 cut(s) 872
DdeI CTNAG 3 cut(s) 48, 60, 969
DpnI GATC 4 cut(s) 225, 355, 753, 829
DpnII GATC 4 cut(s) 223, 353, 751, 827
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 2 cut(s) 564, 681
Eco91I GGTNACC 1 cut(s) 926
EcoO65I GGTNACC 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 882
FaeI CATG 3 cut(s) 185, 206, 408
FatI CATG 3 cut(s) 181, 202, 404
Fnu4HI GCNGC 2 cut(s) 114, 486
FokI GGATG 9 cut(s) 122, 338, 381, 452, 561, 588, 678, 705, 819
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 2 cut(s) 114, 486
FspBI CTAG 1 cut(s) 365
GluI GCNGC 2 cut(s) 114, 486
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 3 cut(s) 185, 206, 408
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 3 cut(s) 304, 389, 596
HphI GGTGA 2 cut(s) 785, 854
Hpy166II GTNNAC 2 cut(s) 167, 174
Hpy188I TCNGA 6 cut(s) 63, 295, 353, 358, 595, 723
Hpy188III TCNNGA 2 cut(s) 365, 962
Hpy8I GTNNAC 2 cut(s) 167, 174
HpyAV CCTTC 5 cut(s) 323, 457, 503, 588, 705
HpyCH4III ACNGT 2 cut(s) 171, 478
HpyCH4V TGCA 8 cut(s) 116, 202, 404, 449, 488, 718, 767, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 191
HpyF3I CTNAG 3 cut(s) 48, 60, 969
Hsp92II CATG 3 cut(s) 185, 206, 408
KpnI GGTACC 1 cut(s) 875
Kzo9I GATC 4 cut(s) 223, 353, 751, 827
LmnI GCTCC 1 cut(s) 539
LpnPI CCDG 8 cut(s) 63, 204, 833, 861, 878, 888, 945, 975
Lsp1109I GCAGC 2 cut(s) 100, 472
LweI GCATC 5 cut(s) 100, 710, 727, 754, 955
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 3 cut(s) 51, 390, 926
MalI GATC 4 cut(s) 225, 355, 753, 829
MboI GATC 4 cut(s) 223, 353, 751, 827
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 3 cut(s) 223, 751, 827
MhlI GDGCHC 1 cut(s) 882
MluCI AATT 9 cut(s) 39, 422, 433, 544, 556, 661, 673, 768, 938
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 2 cut(s) 408, 630
MroXI GAANNNNTTC 1 cut(s) 942
MseI TTAA 4 cut(s) 209, 261, 900, 1006
MslI CAYNNNNRTG 1 cut(s) 454
MspCI CTTAAG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 876
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 2 cut(s) 119, 191
NdeII GATC 4 cut(s) 223, 353, 751, 827
NlaIII CATG 3 cut(s) 185, 206, 408
NlaIV GGNNCC 2 cut(s) 541, 873
NmuCI GTSAC 2 cut(s) 51, 390
NspI RCATGY 2 cut(s) 185, 408
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 2 cut(s) 304, 596
PkrI GCNGC 2 cut(s) 115, 487
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 874
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 2 cut(s) 541, 873
PspPI GGNCC 2 cut(s) 80, 817
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 3 cut(s) 223, 751, 827
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
RseI CAYNNNNRTG 1 cut(s) 454
SaqAI TTAA 4 cut(s) 209, 261, 900, 1006
SatI GCNGC 2 cut(s) 114, 486
Sau3AI GATC 4 cut(s) 223, 353, 751, 827
Sau96I GGNCC 2 cut(s) 80, 817
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 876
SduI GDGCHC 1 cut(s) 882
SfaNI GCATC 5 cut(s) 100, 710, 727, 754, 955
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 9 cut(s) 39, 422, 433, 544, 556, 661, 673, 768, 938
SsiI CCGC 1 cut(s) 22
SspI AATATT 1 cut(s) 496
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 874
TaaI ACNGT 2 cut(s) 171, 478
TasI AATT 9 cut(s) 39, 422, 433, 544, 556, 661, 673, 768, 938
TfiI GAWTC 2 cut(s) 304, 596
Tru1I TTAA 4 cut(s) 209, 261, 900, 1006
Tru9I TTAA 4 cut(s) 209, 261, 900, 1006
TscAI CASTG 2 cut(s) 176, 612
TseFI GTSAC 2 cut(s) 51, 390
TseI GCWGC 2 cut(s) 113, 485
Tsp45I GTSAC 2 cut(s) 51, 390
TspDTI ATGAA 8 cut(s) 80, 158, 342, 415, 538, 626, 669, 870
TspRI CASTG 2 cut(s) 176, 612
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 2 cut(s) 422, 938
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 2 cut(s) 185, 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.