Rmu_sc0009806.1_g000002
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009806.1
OG0000244
Physical Location & Seq
Reverse (-)
10292 .. 12032
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009806.1_g000002.1.cds

Sequence Viewer

Length: 738 bp
atgagtagaattagaggaaatgaggtcaaaaaccaaaaaccaaatggaaagaatgaaggaaagagcaaaggaaagactgaagccaagaactatttgcagtggaagttagatatggaggatgctttggttgacatacttcatgaggaacgaggtttgggccataaaggagataatggttggaaggttgtagcttataatacagctgatattttatctatacaatttgatattcaaataactgctgacaatataaaaaaccctgtgaagtcatggaaaaagttttatggaatttctcatgatgaagctgttaactttcagtttaaaagaatccaaaattgggatgatatagttgatttgtgtggcaaagatagagccactggaaagggtgttgaaaaaggtttcgaagccattgaggttatgactcttcatgtcaatgaagataatcatgttgatttggaaggtgatgaccaaacatcagaagatattcacatcattgaagacatttcaccgaaccaagcaacccaatttcgccctctcaccttcgccggcgtcgttcttcctcctccggccacgttttgcttagattacaaaaggaatcctgctctcctcagtcccctctacatgtctgtggtggtgattcgtcgtgggaagcaccgtgcacaaagatataaggccgagaagtcgcatggtggagctgcagatcgcccagatcagagatcacgtttccggccaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

245

Amino Acids

27.82

Weight (kDa)

7.78

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 567, 728
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 3 cut(s) 233, 392, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 4 cut(s) 191, 203, 305, 695
AluI AGCT 4 cut(s) 191, 203, 305, 695
Alw21I GWGCWC 1 cut(s) 661
Alw44I GTGCAC 1 cut(s) 657
AoxI GGCC 4 cut(s) 157, 567, 672, 728
ApaLI GTGCAC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 473, 498, 529, 646
AsuII TTCGAA 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 1 cut(s) 682
BfmI CTRYAG 1 cut(s) 696
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 549
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 124, 346
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 622
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 2 cut(s) 552, 596
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 1 cut(s) 682
BshFI GGCC 4 cut(s) 159, 569, 674, 730
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 3 cut(s) 546, 566, 727
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 4 cut(s) 159, 569, 674, 730
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 3 cut(s) 700, 709, 716
BspANI GGCC 4 cut(s) 159, 569, 674, 730
BspCNI CTCAG 1 cut(s) 621
BspHI TCATGA 2 cut(s) 139, 295
BspMAI CTGCAG 1 cut(s) 700
BspT104I TTCGAA 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 545
BssMI GATC 3 cut(s) 700, 709, 716
BssNI GRCGYC 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 2 cut(s) 580, 608
BstF5I GGATG 2 cut(s) 124, 346
BstKTI GATC 3 cut(s) 703, 712, 719
BstMBI GATC 3 cut(s) 700, 709, 716
BstNSI RCATGY 1 cut(s) 625
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 682
BstV2I GAAGAC 1 cut(s) 504
BsuRI GGCC 4 cut(s) 159, 569, 674, 730
BtsCI GGATG 2 cut(s) 124, 346
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 104, 375
Cac8I GCNNGC 1 cut(s) 547
CciI TCATGA 2 cut(s) 139, 295
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 538
CviAII CATG 7 cut(s) 140, 270, 296, 428, 446, 622, 686
DdeI CTNAG 2 cut(s) 580, 608
DpnI GATC 3 cut(s) 702, 711, 718
DpnII GATC 3 cut(s) 700, 709, 716
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 567, 728
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 99
FaeI CATG 7 cut(s) 143, 273, 299, 431, 449, 625, 689
FaqI GGGAC 1 cut(s) 597
FatI CATG 7 cut(s) 139, 269, 295, 427, 445, 621, 685
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 2 cut(s) 131, 353
Fsp4HI GCNGC 1 cut(s) 696
GluI GCNGC 1 cut(s) 696
HaeIII GGCC 4 cut(s) 159, 569, 674, 730
HapII CCGG 3 cut(s) 546, 566, 727
HgaI GACGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 7 cut(s) 143, 273, 299, 431, 449, 625, 689
HincII GTYRAC 2 cut(s) 130, 310
HindII GTYRAC 2 cut(s) 130, 310
HinfI GANTC 4 cut(s) 327, 421, 595, 637
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 3 cut(s) 546, 566, 727
HphI GGTGA 4 cut(s) 473, 498, 529, 646
Hpy166II GTNNAC 3 cut(s) 130, 310, 659
Hpy188I TCNGA 2 cut(s) 478, 714
Hpy188III TCNNGA 2 cut(s) 140, 296
Hpy8I GTNNAC 3 cut(s) 130, 310, 659
Hpy99I CGWCG 2 cut(s) 554, 645
HpyAV CCTTC 4 cut(s) 50, 175, 452, 550
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 2 cut(s) 572, 721
HpyCH4V TGCA 3 cut(s) 97, 659, 698
HpyF3I CTNAG 2 cut(s) 580, 608
HpySE526I ACGT 2 cut(s) 572, 721
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 7 cut(s) 143, 273, 299, 431, 449, 625, 689
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 3 cut(s) 700, 709, 716
LmnI GCTCC 1 cut(s) 692
LpnPI CCDG 6 cut(s) 273, 363, 559, 579, 612, 720
Lsp1109I GCAGC 1 cut(s) 682
LweI GCATC 1 cut(s) 109
MaeII ACGT 2 cut(s) 572, 721
MalI GATC 3 cut(s) 702, 711, 718
MboI GATC 3 cut(s) 700, 709, 716
MboII GAAGA 5 cut(s) 416, 449, 491, 509, 548
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 5 cut(s) 9, 221, 288, 334, 524
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 1 cut(s) 158
MreI CGCCGGCG 1 cut(s) 545
MroNI GCCGGC 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 2 cut(s) 309, 321
MslI CAYNNNNRTG 2 cut(s) 432, 626
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 3 cut(s) 546, 566, 727
NaeI GCCGGC 1 cut(s) 547
NdeII GATC 3 cut(s) 700, 709, 716
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 7 cut(s) 143, 273, 299, 431, 449, 625, 689
NmeAIII GCCGAG 1 cut(s) 700
NspI RCATGY 1 cut(s) 625
NspV TTCGAA 1 cut(s) 402
PagI TCATGA 2 cut(s) 139, 295
PciI ACATGT 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PdiI GCCGGC 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 327, 595, 637
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 621
PsiI TTATAA 1 cut(s) 195
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 432, 626
SaqAI TTAA 2 cut(s) 309, 321
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 3 cut(s) 700, 709, 716
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 415
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 696
SfuI TTCGAA 1 cut(s) 402
SgrAI CRCCGGYG 1 cut(s) 545
SmiMI CAYNNNNRTG 2 cut(s) 432, 626
Sse9I AATT 5 cut(s) 9, 221, 288, 334, 524
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 2 cut(s) 575, 724
TaqI TCGA 1 cut(s) 402
TasI AATT 5 cut(s) 9, 221, 288, 334, 524
TfiI GAWTC 3 cut(s) 327, 595, 637
Tru1I TTAA 2 cut(s) 309, 321
Tru9I TTAA 2 cut(s) 309, 321
TscAI CASTG 2 cut(s) 104, 382
TseI GCWGC 1 cut(s) 695
TspDTI ATGAA 5 cut(s) 69, 128, 315, 416, 450
TspRI CASTG 2 cut(s) 104, 382
VneI GTGCAC 1 cut(s) 657
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.