Rh5BG548900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000244
Physical Location & Seq
Reverse (-)
87221996 .. 87224036
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG548900.1

Sequence Viewer

Length: 909 bp
ATGAAGAGTAAGGGCAAGGAAAAATCTCAAAGTCTTGTACCTGTGTCCAATTTTAACTTAAAGGGCAAGGGCAAAGGAACAGGCACATCTAGGGCATATCTCTCTTGGAACAAAGAAATGGATGATGTACTTGCTAAAGTACTTTATGATCAAATGAACGCAGGACACAAGGCTGATGGAGACTGGAAACCTCAAGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACCGACATCAAAAGTCAAAGCGGCCTTGTTTGGGATGAAGAGAAAAAGATGGTTCCAATCACTGCAGAAAACCTGGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAATTGGGATGATATCGCTATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATATTGGAGATGCTGAAGAAACTATGGAATTTAAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCACACATGCAGCAACTTTGACTTGTGAATCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACCTTGAAAGAGTTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAACCTCAGCAAATTGCAAGTCTTCAAAGTTGTACGCATGTTGATGAGTGGTGACCCCAAAGAATTTTCTCTACTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAGAATGCTCATATGGCAATCTGAAGGGCAACCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

302

Amino Acids

33.84

Weight (kDa)

6.68

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 35 - 132 5e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 324
AclWI GGATC 2 cut(s) 635, 648
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 3 cut(s) 381, 533, 818
AcuI CTGAAG 3 cut(s) 540, 851, 909
AfaI GTAC 5 cut(s) 39, 129, 141, 732, 789
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 3 cut(s) 223, 682, 781
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 3 cut(s) 197, 485, 698
AluI AGCT 3 cut(s) 197, 485, 698
Alw26I GTCTC 5 cut(s) 174, 248, 280, 709, 840
AlwI GGATC 2 cut(s) 635, 648
AoxI GGCC 2 cut(s) 325, 669
ApeKI GCWGC 2 cut(s) 590, 695
ApoI RAATTY 3 cut(s) 381, 533, 818
ArsI GACNNNNNNTTYG 2 cut(s) 759, 791
AsuHPI GGTGA 4 cut(s) 295, 503, 674, 818
BalI TGGCCA 1 cut(s) 671
BamHI GGATCC 1 cut(s) 640
BbsI GAAGAC 1 cut(s) 769
BbvCI CCTCAGC 1 cut(s) 761
BbvI GCAGC 2 cut(s) 602, 707
BccI CCATC 2 cut(s) 170, 346
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 5 cut(s) 174, 248, 280, 709, 840
BfaI CTAG 2 cut(s) 90, 647
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 3 cut(s) 325, 591, 696
BlsI GCNGC 3 cut(s) 326, 592, 697
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 357, 642
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 505, 835
BpiI GAAGAC 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 761
BpuEI CTTGAG 3 cut(s) 177, 257, 684
BsaI GGTCTC 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 188, 493
BseBI CCWGG 1 cut(s) 377
BseGI GGATG 6 cut(s) 127, 343, 406, 457, 613, 733
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 775
BseNI ACTGG 2 cut(s) 188, 493
BseXI GCAGC 2 cut(s) 602, 707
BshFI GGCC 2 cut(s) 327, 671
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 5 cut(s) 174, 248, 280, 709, 840
BsmI GAATGC 3 cut(s) 229, 394, 876
BsnI GGCC 2 cut(s) 327, 671
Bso31I GGTCTC 1 cut(s) 248
Bsp1407I TGTACA 1 cut(s) 730
Bsp143I GATC 2 cut(s) 148, 640
BspACI CCGC 1 cut(s) 324
BspANI GGCC 2 cut(s) 327, 671
BspCNI CTCAG 1 cut(s) 774
BspLI GGNNCC 2 cut(s) 357, 642
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 2 cut(s) 635, 648
BspTNI GGTCTC 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 730
BsrI ACTGG 2 cut(s) 188, 493
BssMI GATC 2 cut(s) 148, 640
Bst2UI CCWGG 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 278, 336
BstAUI TGTACA 1 cut(s) 730
BstDEI CTNAG 1 cut(s) 761
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 6 cut(s) 127, 343, 406, 457, 613, 733
BstKTI GATC 2 cut(s) 151, 643
BstMAI GTCTC 5 cut(s) 174, 248, 280, 709, 840
BstMBI GATC 2 cut(s) 148, 640
BstMWI GCNNNNNNNGC 3 cut(s) 203, 587, 880
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 3 cut(s) 581, 590, 796
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 602, 707
BstV2I GAAGAC 1 cut(s) 769
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 2 cut(s) 327, 671
BtsCI GGATG 6 cut(s) 127, 343, 406, 457, 613, 733
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Csp6I GTAC 5 cut(s) 38, 128, 140, 731, 788
CviAII CATG 5 cut(s) 231, 578, 587, 734, 793
CviJI RGCY 7 cut(s) 173, 197, 278, 327, 485, 671, 698
CviKI_1 RGCY 7 cut(s) 173, 197, 278, 327, 485, 671, 698
CviQI GTAC 5 cut(s) 38, 128, 140, 731, 788
DdeI CTNAG 1 cut(s) 761
DpnI GATC 2 cut(s) 150, 642
DpnII GATC 2 cut(s) 148, 640
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 278, 336
EarI CTCTTC 2 cut(s) 278, 336
Eco31I GGTCTC 1 cut(s) 248
Eco32I GATATC 2 cut(s) 425, 457
Eco57I CTGAAG 3 cut(s) 540, 851, 909
Eco91I GGTNACC 1 cut(s) 806
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 375
EcoRV GATATC 2 cut(s) 425, 457
FaeI CATG 5 cut(s) 234, 581, 590, 737, 796
FatI CATG 5 cut(s) 230, 577, 586, 733, 792
FauNDI CATATG 1 cut(s) 878
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 325, 591, 696
FokI GGATG 6 cut(s) 134, 350, 393, 464, 600, 740
Fsp4HI GCNGC 3 cut(s) 325, 591, 696
FspBI CTAG 2 cut(s) 90, 647
GluI GCNGC 3 cut(s) 325, 591, 696
HaeIII GGCC 2 cut(s) 327, 671
Hin1II CATG 5 cut(s) 234, 581, 590, 737, 796
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 4 cut(s) 270, 401, 565, 608
HphI GGTGA 4 cut(s) 295, 503, 674, 818
Hpy188I TCNGA 1 cut(s) 889
Hpy188III TCNNGA 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 488, 884
HpyCH4V TGCA 3 cut(s) 368, 590, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 587, 880
HpyF3I CTNAG 1 cut(s) 761
Hsp92II CATG 5 cut(s) 234, 581, 590, 737, 796
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 640
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 7 cut(s) 54, 66, 147, 169, 362, 389, 474
Lsp1109I GCAGC 2 cut(s) 602, 707
LweI GCATC 2 cut(s) 505, 835
MaeI CTAG 2 cut(s) 90, 647
MaeIII GTNAC 3 cut(s) 402, 562, 806
MalI GATC 2 cut(s) 150, 642
MboI GATC 2 cut(s) 148, 640
MboII GAAGA 8 cut(s) 16, 295, 353, 515, 533, 557, 560, 769
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 9 cut(s) 49, 381, 445, 533, 571, 657, 767, 818, 904
MluNI TGGCCA 1 cut(s) 671
MlyI GAGTC 3 cut(s) 264, 410, 559
MnlI CCTC 5 cut(s) 201, 468, 627, 718, 770
Mox20I TGGCCA 1 cut(s) 671
MscI TGGCCA 1 cut(s) 671
MseI TTAA 5 cut(s) 54, 59, 255, 537, 840
MslI CAYNNNNRTG 2 cut(s) 411, 797
Msp20I TGGCCA 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 377
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 3 cut(s) 229, 394, 876
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 3 cut(s) 203, 587, 880
NdeI CATATG 1 cut(s) 878
NdeII GATC 2 cut(s) 148, 640
NlaIII CATG 5 cut(s) 234, 581, 590, 737, 796
NlaIV GGNNCC 2 cut(s) 357, 642
NmuCI GTSAC 3 cut(s) 402, 562, 806
NspI RCATGY 3 cut(s) 581, 590, 796
PctI GAATGC 3 cut(s) 229, 394, 876
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 3 cut(s) 326, 592, 697
PleI GAGTC 3 cut(s) 264, 409, 559
PpsI GAGTC 3 cut(s) 264, 409, 559
Psp6I CCWGG 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 357, 642
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 5 cut(s) 39, 129, 141, 732, 789
RsaNI GTAC 5 cut(s) 38, 128, 140, 731, 788
RseI CAYNNNNRTG 2 cut(s) 411, 797
SaqAI TTAA 5 cut(s) 54, 59, 255, 537, 840
SatI GCNGC 3 cut(s) 325, 591, 696
Sau3AI GATC 2 cut(s) 148, 640
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 3 cut(s) 264, 410, 559
ScrFI CCNGG 1 cut(s) 377
SetI ASST 8 cut(s) 43, 193, 199, 378, 487, 680, 700, 762
SfaNI GCATC 2 cut(s) 505, 835
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 411, 797
SmlI CTYRAG 3 cut(s) 192, 272, 699
SmoI CTYRAG 3 cut(s) 192, 272, 699
Sse9I AATT 9 cut(s) 49, 381, 445, 533, 571, 657, 767, 818, 904
SsiI CCGC 1 cut(s) 324
SspMI CTAG 2 cut(s) 90, 647
StyD4I CCNGG 1 cut(s) 375
TasI AATT 9 cut(s) 49, 381, 445, 533, 571, 657, 767, 818, 904
TatI WGTACW 3 cut(s) 127, 139, 730
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 5 cut(s) 54, 59, 255, 537, 840
Tru9I TTAA 5 cut(s) 54, 59, 255, 537, 840
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 3 cut(s) 402, 562, 806
TseI GCWGC 2 cut(s) 590, 695
Tsp45I GTSAC 3 cut(s) 402, 562, 806
TspDTI ATGAA 5 cut(s) 17, 170, 354, 567, 750
TspRI CASTG 1 cut(s) 370
XapI RAATTY 3 cut(s) 381, 533, 818
XceI RCATGY 3 cut(s) 581, 590, 796
XspI CTAG 2 cut(s) 90, 647
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.