Prupe.5G014400_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000244
Physical Location & Seq
Reverse (-)
1557304 .. 1557877
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G014400.1

Sequence Viewer

Length: 516 bp
ATGGAATACACAATGGAGCGTTCATTAGCGGATATACTTAGAGAAGAACGTCAGCTCGGTCACAAAGGAGATGGTGGTTGGAATGCAGTTGCTTATAACACCGCTGCTGCCATATTGTCTGCACAATTTGATATTGAAGTAAGTGCTGATAACATAAGAAATCGTGTTAAAACCTGGAAAAGGTTTTATGGTATAGTCAGTGATATATTAAGTCAGAGCACTTTCAGCACTGAGGGCCAGTCCTGCAAAAGAGGGCATGAGGGTCGTTTTGCAGTTCCATTGCGCAACAGCAACCCACCAGGCAAGCCCAAAGGCAAATCGAGCTCGTGCTATTGCTCGAAGGCTATTGACGCCAATCTGGCGTCAGCGCACTATTTCAAAATTTTTTTTACTATTGCTCCTAGCATCAACCCTGTTTTTCCCCCAACAGATAGAAGTCACGTGGCGTTTCTAGGGGCGTCCAATCCAATATTTCTCCTCCAATCTAACAGCAGCCAATTGTGTGTAAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

172

Amino Acids

18.83

Weight (kDa)

9.14

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 96, 514
Acc16I TGCGCA 1 cut(s) 284
AciI CCGC 2 cut(s) 29, 102
AcsI RAATTY 2 cut(s) 381, 508
AcvI CACGTG 1 cut(s) 442
AcyI GRCGYC 3 cut(s) 351, 362, 458
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 137, 379
AjnI CCWGG 2 cut(s) 173, 298
AluBI AGCT 2 cut(s) 55, 324
AluI AGCT 2 cut(s) 55, 324
Alw21I GWGCWC 2 cut(s) 221, 326
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 104, 107, 492
ApoI RAATTY 2 cut(s) 381, 508
AspLEI GCGC 2 cut(s) 285, 370
AspS9I GGNCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 326
BauI CACGAG 1 cut(s) 325
BbrPI CACGTG 1 cut(s) 442
Bbv12I GWGCWC 2 cut(s) 221, 326
BbvI GCAGC 3 cut(s) 91, 94, 504
BccI CCATC 1 cut(s) 65
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 2 cut(s) 175, 300
BfaI CTAG 2 cut(s) 402, 452
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 3 cut(s) 105, 108, 493
BlsI GCNGC 3 cut(s) 106, 109, 494
Bme1390I CCNGG 2 cut(s) 175, 300
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 175, 300
BmsI GCATC 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 442
BsaHI GRCGYC 3 cut(s) 351, 362, 458
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 278
BseBI CCWGG 2 cut(s) 175, 300
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 3 cut(s) 91, 94, 504
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 221, 326
BslI CCNNNNNNNGG 1 cut(s) 180
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 221, 326
BspACI CCGC 2 cut(s) 29, 102
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 238
BssNI GRCGYC 3 cut(s) 351, 362, 458
BssSI CACGAG 1 cut(s) 325
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 175, 300
BstACI GRCGYC 3 cut(s) 351, 362, 458
BstBAI YACGTR 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 38, 231
BstENI CCTNNNNNAGG 1 cut(s) 178
BstHHI GCGC 2 cut(s) 285, 370
BstMWI GCNNNNNNNGC 6 cut(s) 225, 234, 243, 321, 350, 359
BstNI CCWGG 2 cut(s) 175, 300
BstSCI CCNGG 2 cut(s) 173, 298
BstV1I GCAGC 3 cut(s) 91, 94, 504
BsuRI GGCC 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 205, 228
Cac8I GCNNGC 1 cut(s) 305
CfoI GCGC 2 cut(s) 285, 370
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 3 cut(s) 351, 359, 447
CviAII CATG 1 cut(s) 257
CviJI RGCY 6 cut(s) 55, 237, 307, 324, 344, 495
CviKI_1 RGCY 6 cut(s) 55, 237, 307, 324, 344, 495
DdeI CTNAG 2 cut(s) 38, 231
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 326
Eco53kI GAGCTC 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 173, 298
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 1 cut(s) 260
FaiI YATR 9 cut(s) 35, 96, 113, 155, 189, 194, 206, 258, 514
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 105, 108, 493
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 105, 108, 493
FspBI CTAG 2 cut(s) 402, 452
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 2 cut(s) 284, 369
GluI GCNGC 3 cut(s) 105, 108, 493
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 3 cut(s) 351, 359, 447
HhaI GCGC 2 cut(s) 285, 370
Hin1I GRCGYC 3 cut(s) 351, 362, 458
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 2 cut(s) 283, 368
HinP1I GCGC 2 cut(s) 283, 368
Hpy188I TCNGA 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 334
HpyCH4IV ACGT 2 cut(s) 49, 441
HpyCH4V TGCA 4 cut(s) 86, 122, 246, 272
HpyF10VI GCNNNNNNNGC 6 cut(s) 225, 234, 243, 321, 350, 359
HpyF3I CTNAG 2 cut(s) 38, 231
HpySE526I ACGT 2 cut(s) 49, 441
Hsp92I GRCGYC 3 cut(s) 351, 362, 458
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 2 cut(s) 283, 368
LmnI GCTCC 2 cut(s) 16, 403
LpnPI CCDG 8 cut(s) 160, 187, 251, 256, 285, 312, 344, 426
Lsp1109I GCAGC 3 cut(s) 91, 94, 504
LweI GCATC 1 cut(s) 414
MaeI CTAG 2 cut(s) 402, 452
MaeII ACGT 2 cut(s) 49, 441
MaeIII GTNAC 2 cut(s) 59, 437
MboII GAAGA 1 cut(s) 56
MfeI CAATTG 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 221, 326
MluCI AATT 4 cut(s) 125, 381, 497, 508
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 4 cut(s) 226, 245, 253, 488
MseI TTAA 2 cut(s) 168, 209
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 175, 300
MunI CAATTG 1 cut(s) 497
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 175, 300
MwoI GCNNNNNNNGC 6 cut(s) 225, 234, 243, 321, 350, 359
NlaIII CATG 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 59, 437
NsbI TGCGCA 1 cut(s) 284
PctI GAATGC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 106, 109, 494
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 442
PsiI TTATAA 2 cut(s) 96, 514
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 173, 298
PspCI CACGTG 1 cut(s) 442
PspGI CCWGG 2 cut(s) 173, 298
PspPI GGNCC 1 cut(s) 235
SacI GAGCTC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 168, 209
SatI GCNGC 3 cut(s) 105, 108, 493
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 175, 300
SduI GDGCHC 2 cut(s) 221, 326
SetI ASST 6 cut(s) 52, 57, 176, 185, 326, 444
SfaNI GCATC 1 cut(s) 414
Sse9I AATT 4 cut(s) 125, 381, 497, 508
SsiI CCGC 2 cut(s) 29, 102
SspI AATATT 1 cut(s) 471
SspMI CTAG 2 cut(s) 402, 452
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 173, 298
TaiI ACGT 2 cut(s) 52, 444
TaqI TCGA 2 cut(s) 320, 338
TaqII GACCGA 1 cut(s) 47
TasI AATT 4 cut(s) 125, 381, 497, 508
Tru1I TTAA 2 cut(s) 168, 209
Tru9I TTAA 2 cut(s) 168, 209
TscAI CASTG 2 cut(s) 205, 235
TseFI GTSAC 2 cut(s) 59, 437
TseI GCWGC 3 cut(s) 104, 107, 492
Tsp45I GTSAC 2 cut(s) 59, 437
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 2 cut(s) 205, 235
XagI CCTNNNNNAGG 1 cut(s) 178
XapI RAATTY 2 cut(s) 381, 508
XspI CTAG 2 cut(s) 402, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.