RLG00000028831
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000244
Physical Location & Seq
Reverse (-)
28908439 .. 28909637
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028831

Sequence Viewer

Length: 684 bp
ATGGTTTCAGGACACAAGGCTGATGGAGACTGGAAACCGCAAGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACAGACATCAGAAGTCAAAGTGGGCTTGTTTGGGATGAAGAGAAAAAGATGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAAAAAATTGGGATGATATCGCTATGCTATATGGGAGGGATAGAGCTACGGGTGAAGGAGCAAAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAAATGAAAGTCATGTGACTCCCAATTCATATGCCTCAACACATGCAGCAACTTCAACTTGTGATTCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGCTGTATGCATATTGATGAGTTGTAACTCCGAAGAATTTTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

228

Amino Acids

25.38

Weight (kDa)

6.66

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 4 - 67 9.6e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AclWI GGATC 2 cut(s) 437, 450
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 3 cut(s) 332, 488, 620
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 534
AgsI TTSAA 6 cut(s) 70, 338, 402, 484, 583, 634
AluBI AGCT 4 cut(s) 44, 284, 500, 587
AluI AGCT 4 cut(s) 44, 284, 500, 587
Alw26I GTCTC 5 cut(s) 21, 95, 127, 511, 642
AlwI GGATC 2 cut(s) 437, 450
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 2 cut(s) 392, 497
ApoI RAATTY 3 cut(s) 332, 488, 620
AsuHPI GGTGA 1 cut(s) 302
BalI TGGCCA 1 cut(s) 473
BamHI GGATCC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 404, 509
BccI CCATC 1 cut(s) 17
BcoDI GTCTC 5 cut(s) 21, 95, 127, 511, 642
BfaI CTAG 1 cut(s) 449
BisI GCNGC 2 cut(s) 393, 498
BlsI GCNGC 2 cut(s) 394, 499
BmiI GGNNCC 1 cut(s) 444
BmsI GCATC 2 cut(s) 304, 637
BpuEI CTTGAG 2 cut(s) 104, 486
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bse1I ACTGG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 414
BseGI GGATG 5 cut(s) 190, 205, 256, 415, 535
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 1 cut(s) 577
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 404, 509
BshFI GGCC 1 cut(s) 473
BsmAI GTCTC 5 cut(s) 21, 95, 127, 511, 642
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 473
Bso31I GGTCTC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 2 cut(s) 437, 450
BspTNI GGTCTC 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 1 cut(s) 35
BssMI GATC 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 125, 183
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 563
BstF5I GGATG 5 cut(s) 190, 205, 256, 415, 535
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 5 cut(s) 21, 95, 127, 511, 642
BstMBI GATC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 404, 509
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 5 cut(s) 190, 205, 256, 415, 535
Cac8I GCNNGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 533
CviAII CATG 4 cut(s) 78, 359, 389, 536
CviJI RGCY 8 cut(s) 20, 44, 125, 175, 284, 473, 500, 587
CviKI_1 RGCY 8 cut(s) 20, 44, 125, 175, 284, 473, 500, 587
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 1 cut(s) 563
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 125, 183
EarI CTCTTC 2 cut(s) 125, 183
Eco31I GGTCTC 1 cut(s) 95
Eco32I GATATC 2 cut(s) 224, 256
Eco57I CTGAAG 1 cut(s) 339
EcoRV GATATC 2 cut(s) 224, 256
EcoT22I ATGCAT 1 cut(s) 596
FaeI CATG 4 cut(s) 81, 362, 392, 539
FatI CATG 4 cut(s) 77, 358, 388, 535
FauNDI CATATG 2 cut(s) 376, 680
Fnu4HI GCNGC 2 cut(s) 393, 498
FokI GGATG 5 cut(s) 192, 197, 263, 402, 542
Fsp4HI GCNGC 2 cut(s) 393, 498
FspBI CTAG 1 cut(s) 449
GluI GCNGC 2 cut(s) 393, 498
HaeIII GGCC 1 cut(s) 473
Hin1II CATG 4 cut(s) 81, 362, 392, 539
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 3 cut(s) 117, 364, 410
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 161, 616
Hpy188III TCNNGA 2 cut(s) 9, 109
HpyAV CCTTC 2 cut(s) 287, 478
HpyCH4V TGCA 3 cut(s) 392, 574, 594
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 563
Hsp92II CATG 4 cut(s) 81, 362, 392, 539
Kzo9I GATC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 404, 509
LweI GCATC 2 cut(s) 304, 637
MaeI CTAG 1 cut(s) 449
MaeIII GTNAC 3 cut(s) 201, 361, 608
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 5 cut(s) 142, 200, 332, 356, 629
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 1 cut(s) 442
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 7 cut(s) 244, 332, 370, 459, 488, 569, 620
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 2 cut(s) 111, 358
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 4 cut(s) 267, 391, 429, 520
Mox20I TGGCCA 1 cut(s) 473
Mph1103I ATGCAT 1 cut(s) 596
MscI TGGCCA 1 cut(s) 473
MseI TTAA 2 cut(s) 102, 642
MslI CAYNNNNRTG 2 cut(s) 210, 599
Msp20I TGGCCA 1 cut(s) 473
MunI CAATTG 1 cut(s) 459
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeI CATATG 2 cut(s) 376, 680
NdeII GATC 1 cut(s) 442
NlaIII CATG 4 cut(s) 81, 362, 392, 539
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 2 cut(s) 201, 361
NsiI ATGCAT 1 cut(s) 596
NspI RCATGY 1 cut(s) 392
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 394, 499
PleI GAGTC 2 cut(s) 111, 358
PpsI GAGTC 2 cut(s) 111, 358
PspN4I GGNNCC 1 cut(s) 444
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
RseI CAYNNNNRTG 2 cut(s) 210, 599
SaqAI TTAA 2 cut(s) 102, 642
SatI GCNGC 2 cut(s) 393, 498
Sau3AI GATC 1 cut(s) 442
SchI GAGTC 2 cut(s) 111, 358
SetI ASST 5 cut(s) 46, 286, 482, 502, 589
SfaNI GCATC 2 cut(s) 304, 637
SmiMI CAYNNNNRTG 2 cut(s) 210, 599
SmlI CTYRAG 2 cut(s) 119, 501
SmoI CTYRAG 2 cut(s) 119, 501
Sse9I AATT 7 cut(s) 244, 332, 370, 459, 488, 569, 620
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 449
TasI AATT 7 cut(s) 244, 332, 370, 459, 488, 569, 620
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 2 cut(s) 102, 642
Tru9I TTAA 2 cut(s) 102, 642
TseFI GTSAC 2 cut(s) 201, 361
TseI GCWGC 2 cut(s) 392, 497
Tsp45I GTSAC 2 cut(s) 201, 361
TspDTI ATGAA 5 cut(s) 201, 363, 366, 552, 667
XapI RAATTY 3 cut(s) 332, 488, 620
XceI RCATGY 1 cut(s) 392
XspI CTAG 1 cut(s) 449
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.