RLG00000015126
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000244
Physical Location & Seq
Reverse (-)
62088297 .. 62090668
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015126

Sequence Viewer

Length: 933 bp
ATGAGTAGACTTGGAGGAAATGAGGTCAAAAACCGAAAACCAAATGGAAACAGCAAAGGAAAGGCCGAAGGCAAGAACTATTTGCAGTGGAATTTAAATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTTTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATAAGTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTATGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCGTTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAACTGCAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAAAGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAAATATTCACATCATTGAAGACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAACTGTCTCTTCTAGTGCACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTAGGTTCTTCCGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATAATGGCAATACAAGATCTTTCTAGAGAAGAACAGATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGACATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

34.79

Weight (kDa)

5.2

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 29 - 124 7.2e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AccI GTMKAC 1 cut(s) 7
AclWI GGATC 1 cut(s) 931
AcsI RAATTY 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 4 cut(s) 224, 584, 725, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 5 cut(s) 173, 179, 191, 315, 399
AluI AGCT 5 cut(s) 173, 179, 191, 315, 399
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 2 cut(s) 384, 643
Alw44I GTGCAC 1 cut(s) 648
AlwI GGATC 1 cut(s) 931
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 2 cut(s) 63, 145
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 4 cut(s) 269, 570, 712, 732
AspLEI GCGC 1 cut(s) 830
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 560, 585
AsuII TTCGAA 1 cut(s) 489
BaeGI GKGCMC 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 384, 643
BfaI CTAG 2 cut(s) 645, 804
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 796
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 872
BmsI GCATC 1 cut(s) 569
BmuI ACTGGG 1 cut(s) 872
BpiI GAAGAC 1 cut(s) 591
BpmI CTGGAG 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 699
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 469, 878
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 1 cut(s) 433
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 2 cut(s) 489, 626
BseNI ACTGG 2 cut(s) 469, 878
BseRI GAGGAG 2 cut(s) 501, 645
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 2 cut(s) 65, 147
BsiHKAI GWGCWC 1 cut(s) 652
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 384, 643
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 2 cut(s) 65, 147
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 2 cut(s) 796, 923
BspANI GGCC 2 cut(s) 65, 147
BspCNI CTCAG 2 cut(s) 490, 625
BspHI TCATGA 1 cut(s) 382
BspPI GGATC 1 cut(s) 931
BspT104I TTCGAA 1 cut(s) 489
BsrI ACTGG 2 cut(s) 469, 878
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 2 cut(s) 796, 923
Bst4CI ACNGT 4 cut(s) 213, 251, 356, 637
Bst6I CTCTTC 2 cut(s) 646, 661
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 108, 397, 826
BstDEI CTNAG 3 cut(s) 498, 612, 688
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 830
BstKTI GATC 2 cut(s) 799, 926
BstMAI GTCTC 2 cut(s) 384, 643
BstMBI GATC 2 cut(s) 796, 923
BstNSI RCATGY 1 cut(s) 828
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 652
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 796, 923
BstYI RGATCY 2 cut(s) 796, 923
BsuRI GGCC 2 cut(s) 65, 147
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 433
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 5 cut(s) 92, 361, 462, 495, 885
Cac8I GCNNGC 3 cut(s) 108, 397, 826
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 830
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 6 cut(s) 261, 383, 533, 825, 862, 898
DdeI CTNAG 3 cut(s) 498, 612, 688
DpnI GATC 2 cut(s) 798, 925
DpnII GATC 2 cut(s) 796, 923
DraI TTTAAA 2 cut(s) 96, 409
Eam1104I CTCTTC 2 cut(s) 646, 661
EarI CTCTTC 2 cut(s) 646, 661
Eco32I GATATC 1 cut(s) 292
EcoRV GATATC 1 cut(s) 292
FaeI CATG 6 cut(s) 264, 386, 536, 828, 865, 901
FaqI GGGAC 1 cut(s) 860
FatI CATG 6 cut(s) 260, 382, 532, 824, 861, 897
FauNDI CATATG 1 cut(s) 919
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 645, 804
GlaI GCGC 1 cut(s) 829
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 2 cut(s) 65, 147
HhaI GCGC 1 cut(s) 830
Hin1II CATG 6 cut(s) 264, 386, 536, 828, 865, 901
Hin6I GCGC 1 cut(s) 828
HinP1I GCGC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 397
HinfI GANTC 3 cut(s) 320, 414, 508
HphI GGTGA 2 cut(s) 560, 585
Hpy166II GTNNAC 2 cut(s) 8, 650
Hpy188I TCNGA 2 cut(s) 565, 615
Hpy188III TCNNGA 4 cut(s) 128, 295, 383, 804
Hpy8I GTNNAC 2 cut(s) 8, 650
HpyAV CCTTC 3 cut(s) 62, 539, 862
HpyCH4III ACNGT 4 cut(s) 213, 251, 356, 637
HpyCH4V TGCA 5 cut(s) 85, 209, 395, 650, 929
HpyF3I CTNAG 3 cut(s) 498, 612, 688
Hsp92II CATG 6 cut(s) 264, 386, 536, 828, 865, 901
HspAI GCGC 1 cut(s) 828
Kzo9I GATC 2 cut(s) 796, 923
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 5 cut(s) 301, 450, 468, 528, 891
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 569
MaeI CTAG 2 cut(s) 645, 804
MaeIII GTNAC 1 cut(s) 670
MalI GATC 2 cut(s) 798, 925
MboI GATC 2 cut(s) 796, 923
MboII GAAGA 8 cut(s) 377, 536, 596, 633, 678, 687, 737, 821
MflI RGATCY 2 cut(s) 796, 923
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 4 cut(s) 91, 279, 421, 854
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 146
MroXI GAANNNNTTC 4 cut(s) 269, 570, 712, 732
MseI TTAA 2 cut(s) 95, 408
MspA1I CMGCKG 1 cut(s) 191
NdeI CATATG 1 cut(s) 919
NdeII GATC 2 cut(s) 796, 923
NlaIII CATG 6 cut(s) 264, 386, 536, 828, 865, 901
NspI RCATGY 1 cut(s) 828
NspV TTCGAA 1 cut(s) 489
PaeI GCATGC 1 cut(s) 828
PagI TCATGA 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PdmI GAANNNNTTC 4 cut(s) 269, 570, 712, 732
PfeI GAWTC 2 cut(s) 320, 414
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PsiI TTATAA 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 796, 923
PvuII CAGCTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 95, 408
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 796, 923
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 502
SduI GDGCHC 1 cut(s) 652
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 489
SmiI ATTTAAAT 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SphI GCATGC 1 cut(s) 828
Sse9I AATT 4 cut(s) 91, 279, 421, 854
SspI AATATT 1 cut(s) 571
SspMI CTAG 2 cut(s) 645, 804
SwaI ATTTAAAT 1 cut(s) 96
TaaI ACNGT 4 cut(s) 213, 251, 356, 637
TaqI TCGA 2 cut(s) 489, 537
TasI AATT 4 cut(s) 91, 279, 421, 854
TfiI GAWTC 2 cut(s) 320, 414
Tru1I TTAA 2 cut(s) 95, 408
Tru9I TTAA 2 cut(s) 95, 408
TscAI CASTG 5 cut(s) 92, 361, 469, 502, 885
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 6 cut(s) 363, 402, 642, 705, 902, 906
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 5 cut(s) 92, 361, 469, 502, 885
VneI GTGCAC 1 cut(s) 648
XapI RAATTY 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 1 cut(s) 828
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 4 cut(s) 269, 570, 712, 732
XspI CTAG 2 cut(s) 645, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.