Rw2G034500
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000244
Physical Location & Seq
Forward (+)
56793147 .. 56794064
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034500.1

Sequence Viewer

Length: 675 bp
ATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGTTGTAGCTTATAATACAGCTGCTGATATTTTATCTTTCTATGAAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCGTTGATGAAAATAGTGTATGGGAAGAATATGTGAAGTTTTCTATAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAGCAGGTTTCGAAGCCACTGAGGTTATGACTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGCAACAGTCTCTTCTAGTGTACCTCCTCCAGAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAAAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGGAATACCAGATCTTTCTAGAGAAGAACAAATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAGTTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGATATGGTGTTGATGTATATTTCGTATGGATTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

4.55

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 393, 436
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 467, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 4 cut(s) 80, 92, 153, 228
AluI AGCT 4 cut(s) 80, 92, 153, 228
Alw26I GTCTC 1 cut(s) 385
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 318
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
BbvI GCAGC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 387, 546
BfuAI ACCTGC 1 cut(s) 302
BglII AGATCT 1 cut(s) 538
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 614
BmuI ACTGGG 1 cut(s) 614
BpmI CTGGAG 2 cut(s) 315, 384
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 298, 620
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 298, 620
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 1 cut(s) 538
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 318
BsrI ACTGG 2 cut(s) 298, 620
BssMI GATC 1 cut(s) 538
Bst4CI ACNGT 2 cut(s) 379, 597
Bst6I CTCTTC 2 cut(s) 388, 403
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 9, 568
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 538
BstNSI RCATGY 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 291, 324, 627
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 9, 568
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 392, 435
CviAII CATG 4 cut(s) 359, 526, 567, 604
CviQI GTAC 2 cut(s) 392, 435
DdeI CTNAG 1 cut(s) 327
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 388, 403
EarI CTCTTC 2 cut(s) 388, 403
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 327
EcoRV GATATC 1 cut(s) 130
FaeI CATG 4 cut(s) 362, 529, 570, 607
FaqI GGGAC 1 cut(s) 602
FatI CATG 4 cut(s) 358, 525, 566, 603
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 387, 546
GlaI GCGC 1 cut(s) 571
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 2 cut(s) 315, 384
HaeIII GGCC 1 cut(s) 48
HhaI GCGC 1 cut(s) 572
Hin1II CATG 4 cut(s) 362, 529, 570, 607
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 3 cut(s) 158, 243, 337
Hpy166II GTNNAC 1 cut(s) 392
Hpy188III TCNNGA 4 cut(s) 29, 133, 401, 546
Hpy8I GTNNAC 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 2 cut(s) 379, 597
HpyCH4V TGCA 1 cut(s) 671
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 4 cut(s) 362, 529, 570, 607
HspAI GCGC 1 cut(s) 570
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 29, 139, 279, 297, 354, 414, 549, 633
Lsp1109I GCAGC 1 cut(s) 79
MaeI CTAG 2 cut(s) 387, 546
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 6 cut(s) 215, 362, 375, 420, 479, 563
MflI RGATCY 1 cut(s) 538
MluCI AATT 2 cut(s) 117, 250
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 7 cut(s) 25, 32, 172, 292, 322, 405, 408
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 92
NdeII GATC 1 cut(s) 538
NlaIII CATG 4 cut(s) 362, 529, 570, 607
NspI RCATGY 1 cut(s) 570
NspV TTCGAA 1 cut(s) 318
PaeI GCATGC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 158, 243
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PsiI TTATAA 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 538
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 393, 436
RsaNI GTAC 2 cut(s) 392, 435
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 331
SetI ASST 8 cut(s) 43, 82, 94, 155, 230, 316, 333, 397
SfuI TTCGAA 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SphI GCATGC 1 cut(s) 570
Sse9I AATT 2 cut(s) 117, 250
SspMI CTAG 2 cut(s) 387, 546
TaaI ACNGT 2 cut(s) 379, 597
TaqI TCGA 2 cut(s) 318, 363
TasI AATT 2 cut(s) 117, 250
TfiI GAWTC 2 cut(s) 158, 243
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 3 cut(s) 298, 331, 627
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 129, 201, 363, 447, 644
TspRI CASTG 3 cut(s) 298, 331, 627
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 387, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.