Rh6AG328800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000244
Physical Location & Seq
Reverse (-)
53075190 .. 53078826
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG328800.1

Sequence Viewer

Length: 954 bp
ATGCTCGTTCAGGAGAAACCCATAAGTAGGCAATTTCATCATGTTTTGAGATCAGTAGTCAAGCTTGGGAAGTTATACTTGAAGCAACATGAGTTAGTTCTCAATGAGAGAGACTTTGAGAAGTGGAGATGGTTTCAGAATATCAAGCTATTAGAAGAGCTCAAAATTCTTGAATTTTTATTATGTATGAAGAGTAAGGGCATGGAAAAATCTCAAAGTCTTGTACCTGTGTCCAATTTCAACATAAAGGGCAAGGTCAAAGGAACATGTACATCTTGGGCATATCTCTCTTGGAACAAAGAAATGGATGATGTACTCGCTAAAGTACTTTATGATCAAATGAACGCAGACATCAGAAGTCAAAGTGGGCTTGTTTGGGATGAAGAGAAAAAGATGGTTCCAATCACTGCTGAAAACCTAGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAACTGGGATGATATTGCTATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAAATGAAAGTCATGTGACTCCCAATTCATATGCCTCAACACATGCAGCAACTTCAACTTGTGATTCACATCCTGCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCTCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCCAAAGAATTTTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGCTCATATGGCAATCTGAAGGACAACAAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

317

Amino Acids

36.16

Weight (kDa)

5.98

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 680, 693
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 6 cut(s) 165, 173, 423, 575, 731, 863
AcuI CTGAAG 2 cut(s) 582, 954
AfaI GTAC 6 cut(s) 225, 271, 315, 327, 777, 834
AfiI CCNNNNNNNGG 1 cut(s) 27
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 8 cut(s) 82, 173, 241, 581, 645, 727, 826, 877
AluBI AGCT 6 cut(s) 64, 148, 160, 527, 743, 830
AluI AGCT 6 cut(s) 64, 148, 160, 527, 743, 830
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 3 cut(s) 105, 754, 885
AlwI GGATC 2 cut(s) 680, 693
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 635, 740
ApoI RAATTY 6 cut(s) 165, 173, 423, 575, 731, 863
AsuHPI GGTGA 1 cut(s) 545
BalI TGGCCA 1 cut(s) 716
BamHI GGATCC 1 cut(s) 685
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 647, 752
BccI CCATC 2 cut(s) 123, 388
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 3 cut(s) 105, 754, 885
BfaI CTAG 2 cut(s) 419, 692
BisI GCNGC 2 cut(s) 636, 741
BlsI GCNGC 2 cut(s) 637, 742
BmcAI AGTACT 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 399, 687
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 547, 880
BmuI ACTGGG 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 657
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 494, 535
Bse8I GATNNNNATC 1 cut(s) 657
BseGI GGATG 6 cut(s) 313, 385, 448, 499, 658, 778
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 820
BseNI ACTGG 2 cut(s) 494, 535
BseXI GCAGC 2 cut(s) 647, 752
BshFI GGCC 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 3 cut(s) 105, 754, 885
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 162
Bsp1407I TGTACA 2 cut(s) 269, 775
Bsp143I GATC 3 cut(s) 50, 334, 685
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 1 cut(s) 819
BspLI GGNNCC 2 cut(s) 399, 687
BspPI GGATC 2 cut(s) 680, 693
BspQI GCTCTTC 1 cut(s) 150
BsrGI TGTACA 2 cut(s) 269, 775
BsrI ACTGG 2 cut(s) 494, 535
BssMI GATC 3 cut(s) 50, 334, 685
Bst6I CTCTTC 3 cut(s) 150, 185, 378
BstAUI TGTACA 2 cut(s) 269, 775
BstDEI CTNAG 1 cut(s) 806
BstEII GGTNACC 1 cut(s) 851
BstF5I GGATG 6 cut(s) 313, 385, 448, 499, 658, 778
BstKTI GATC 3 cut(s) 53, 337, 688
BstMAI GTCTC 3 cut(s) 105, 754, 885
BstMBI GATC 3 cut(s) 50, 334, 685
BstMWI GCNNNNNNNGC 1 cut(s) 925
BstNSI RCATGY 2 cut(s) 270, 635
BstPI GGTNACC 1 cut(s) 851
BstV1I GCAGC 2 cut(s) 647, 752
BstX2I RGATCY 1 cut(s) 685
BstYI RGATCY 1 cut(s) 685
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 6 cut(s) 313, 385, 448, 499, 658, 778
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Csp6I GTAC 6 cut(s) 224, 270, 314, 326, 776, 833
CviAII CATG 7 cut(s) 41, 89, 202, 267, 602, 632, 779
CviJI RGCY 8 cut(s) 64, 148, 160, 370, 527, 716, 743, 830
CviKI_1 RGCY 8 cut(s) 64, 148, 160, 370, 527, 716, 743, 830
CviQI GTAC 6 cut(s) 224, 270, 314, 326, 776, 833
DdeI CTNAG 1 cut(s) 806
DpnI GATC 3 cut(s) 52, 336, 687
DpnII GATC 3 cut(s) 50, 334, 685
EaeI YGGCCR 1 cut(s) 714
Eam1104I CTCTTC 3 cut(s) 150, 185, 378
EarI CTCTTC 3 cut(s) 150, 185, 378
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 2 cut(s) 582, 954
Eco91I GGTNACC 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 851
EcoRV GATATC 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 7 cut(s) 44, 92, 205, 270, 605, 635, 782
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 7 cut(s) 40, 88, 201, 266, 601, 631, 778
FauNDI CATATG 2 cut(s) 619, 923
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 636, 741
FokI GGATG 6 cut(s) 320, 392, 435, 506, 645, 785
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 636, 741
FspBI CTAG 2 cut(s) 419, 692
GluI GCNGC 2 cut(s) 636, 741
HaeIII GGCC 1 cut(s) 716
Hin1II CATG 7 cut(s) 44, 92, 205, 270, 605, 635, 782
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 3 cut(s) 443, 607, 653
HphI GGTGA 1 cut(s) 545
Hpy188I TCNGA 3 cut(s) 138, 356, 934
Hpy188III TCNNGA 2 cut(s) 11, 170
HpyAV CCTTC 3 cut(s) 530, 721, 929
HpyCH4V TGCA 3 cut(s) 635, 665, 817
HpyF10VI GCNNNNNNNGC 1 cut(s) 925
HpyF3I CTNAG 1 cut(s) 806
Hsp92II CATG 7 cut(s) 44, 92, 205, 270, 605, 635, 782
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 50, 334, 685
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 539
LpnPI CCDG 4 cut(s) 240, 475, 516, 675
Lsp1109I GCAGC 2 cut(s) 647, 752
LweI GCATC 2 cut(s) 547, 880
MaeI CTAG 2 cut(s) 419, 692
MaeIII GTNAC 3 cut(s) 444, 604, 851
MalI GATC 3 cut(s) 52, 336, 687
MboI GATC 3 cut(s) 50, 334, 685
MboII GAAGA 6 cut(s) 167, 202, 395, 557, 575, 599
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 716
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 2 cut(s) 452, 601
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 3 cut(s) 510, 634, 763
Mox20I TGGCCA 1 cut(s) 716
MscI TGGCCA 1 cut(s) 716
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 2 cut(s) 453, 842
Msp20I TGGCCA 1 cut(s) 716
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 925
NdeI CATATG 2 cut(s) 619, 923
NdeII GATC 3 cut(s) 50, 334, 685
NlaIII CATG 7 cut(s) 44, 92, 205, 270, 605, 635, 782
NlaIV GGNNCC 2 cut(s) 399, 687
NmuCI GTSAC 2 cut(s) 444, 604
NspI RCATGY 2 cut(s) 270, 635
PciI ACATGT 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 2 cut(s) 637, 742
PleI GAGTC 2 cut(s) 451, 601
PpsI GAGTC 2 cut(s) 451, 601
PscI ACATGT 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 851
PspN4I GGNNCC 2 cut(s) 399, 687
PsuI RGATCY 1 cut(s) 685
RsaI GTAC 6 cut(s) 225, 271, 315, 327, 777, 834
RsaNI GTAC 6 cut(s) 224, 270, 314, 326, 776, 833
RseI CAYNNNNRTG 2 cut(s) 453, 842
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 2 cut(s) 636, 741
Sau3AI GATC 3 cut(s) 50, 334, 685
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 2 cut(s) 452, 601
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 2 cut(s) 547, 880
SmiMI CAYNNNNRTG 2 cut(s) 453, 842
SmlI CTYRAG 1 cut(s) 744
SmoI CTYRAG 1 cut(s) 744
SspMI CTAG 2 cut(s) 419, 692
SstI GAGCTC 1 cut(s) 162
TatI WGTACW 4 cut(s) 269, 313, 325, 775
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 444, 604
TseI GCWGC 2 cut(s) 635, 740
Tsp45I GTSAC 2 cut(s) 444, 604
TspDTI ATGAA 7 cut(s) 26, 203, 356, 396, 606, 609, 795
TspRI CASTG 1 cut(s) 412
XapI RAATTY 6 cut(s) 165, 173, 423, 575, 731, 863
XceI RCATGY 2 cut(s) 270, 635
XspI CTAG 2 cut(s) 419, 692
ZrmI AGTACT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.