Rmu_sc0009714.1_g000007
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009714.1
OG0000244
Physical Location & Seq
Forward (+)
30257 .. 31300
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009714.1_g000007.1.cds

Sequence Viewer

Length: 888 bp
atgaaaggtaagtcagggccacatatctcatggaacaaagaaatggatgctgcattggctaaagcgttgattgaccaaatgaagcaaggtaataaggttggtggacagtggacaagacatgccattccagcagttgtgcatgagttaaatatgactttagatcttgatttgacaaaagacaatgtgaagaatagacttaaggcttggaagagacattatgccattatttctgatatcaagaatcaaagtcagcttatgtggggtgaagtacatcctcttgcatgtggttatcaaaacaaattcatcgataattgggatgacattgcattgctatgtgggaaggataagacaacagttgaaggtgcagagaatattgaagatgttgaaggagcaatgggagttgaaaaggaaaatggagtcaatttcatctctaattcccgtagtcttacacatccttcagcttcaactttggaatcacatccactgacgaagaaagccaagaaacattcgtggagggttgaagaagaaaatgaagtcaattccatttctaattcacatagctcaacacatccttcagcatcaacttctaacttgcatctgaagaagaagacaacgaaagtgaagaaagatcttttggcagatgcaattggtgagatgacgacttcactaaaggagtatttggcaagcaagatggacctgaatagatcccaacccaaaggtgaagaagtatatgaagtggtttcaaaggtaccagggctcaatagattgcaggtttttaaggctatacgagtattactgaatggtaacccagaagaattctttctattgaaatatcttcctgatgctgagaagacagagtggataccatatcttattagtcattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

295

Amino Acids

33.15

Weight (kDa)

8.31

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 760
Acc65I GGTACC 1 cut(s) 748
AccB1I GGYRCC 1 cut(s) 748
AclWI GGATC 1 cut(s) 699
AcsI RAATTY 2 cut(s) 299, 815
AcuI CTGAAG 3 cut(s) 441, 558, 620
AfaI GTAC 2 cut(s) 270, 750
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 8 cut(s) 359, 377, 386, 404, 465, 521, 744, 829
AjnI CCWGG 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 3 cut(s) 253, 461, 561
AluI AGCT 3 cut(s) 253, 461, 561
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 699
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 299, 815
Asp700I GAANNNNTTC 1 cut(s) 819
Asp718I GGTACC 1 cut(s) 748
AspS9I GGNCC 2 cut(s) 17, 694
AsuHPI GGTGA 3 cut(s) 275, 662, 731
AvaII GGWCC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 2 cut(s) 614, 857
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 685
BciT130I CCWGG 1 cut(s) 753
BciVI GTATCC 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 205
BfrI CTTAAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 760
BfuI GTATCC 1 cut(s) 855
BglII AGATCT 2 cut(s) 160, 628
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 1 cut(s) 694
BmgT120I GGNCC 2 cut(s) 17, 694
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 5 cut(s) 37, 587, 604, 631, 832
BpiI GAAGAC 2 cut(s) 614, 857
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 752
Bse3DI GCAATG 3 cut(s) 321, 326, 399
BseBI CCWGG 1 cut(s) 753
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 752
BseGI GGATG 6 cut(s) 52, 271, 322, 451, 478, 568
BseMI GCAATG 3 cut(s) 321, 326, 399
BseMII CTCAG 1 cut(s) 837
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 748
BshVI ATCGAT 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 3 cut(s) 160, 628, 704
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 838
BspDI ATCGAT 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 750
BspMI ACCTGC 1 cut(s) 760
BspPI GGATC 1 cut(s) 699
BspT107I GGYRCC 1 cut(s) 748
BspTI CTTAAG 1 cut(s) 197
BsrDI GCAATG 3 cut(s) 321, 326, 399
BssECI CCNNGG 1 cut(s) 752
BssMI GATC 3 cut(s) 160, 628, 704
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 108, 355
Bst6I CTCTTC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 1 cut(s) 846
BstEII GGTNACC 1 cut(s) 803
BstF5I GGATG 6 cut(s) 52, 271, 322, 451, 478, 568
BstKTI GATC 3 cut(s) 163, 631, 707
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 3 cut(s) 160, 628, 704
BstMWI GCNNNNNNNGC 2 cut(s) 56, 128
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 122, 285
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 1 cut(s) 751
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 2 cut(s) 614, 857
BstX2I RGATCY 3 cut(s) 160, 628, 704
BstYI RGATCY 3 cut(s) 160, 628, 704
Bsu15I ATCGAT 1 cut(s) 306
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 6 cut(s) 52, 271, 322, 451, 478, 568
BtsIMutI CAGTG 2 cut(s) 113, 482
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 17, 694
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 2 cut(s) 269, 749
CviAII CATG 4 cut(s) 30, 119, 140, 282
CviJI RGCY 9 cut(s) 19, 59, 203, 253, 461, 497, 561, 757, 782
CviKI_1 RGCY 9 cut(s) 19, 59, 203, 253, 461, 497, 561, 757, 782
CviQI GTAC 2 cut(s) 269, 749
DdeI CTNAG 1 cut(s) 846
DpnI GATC 3 cut(s) 162, 630, 706
DpnII GATC 3 cut(s) 160, 628, 704
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 759
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 694
Eco57I CTGAAG 3 cut(s) 441, 558, 620
Eco91I GGTNACC 1 cut(s) 803
EcoO65I GGTNACC 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 815
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 4 cut(s) 33, 122, 143, 285
FatI CATG 4 cut(s) 29, 118, 139, 281
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 6 cut(s) 59, 258, 329, 438, 465, 555
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 4 cut(s) 33, 122, 143, 285
HinfI GANTC 3 cut(s) 241, 417, 473
HphI GGTGA 3 cut(s) 275, 662, 731
Hpy166II GTNNAC 2 cut(s) 104, 111
Hpy188I TCNGA 2 cut(s) 232, 600
Hpy188III TCNNGA 3 cut(s) 164, 238, 839
Hpy8I GTNNAC 2 cut(s) 104, 111
HpyAV CCTTC 5 cut(s) 334, 353, 380, 465, 582
HpyCH4III ACNGT 2 cut(s) 108, 355
HpyCH4V TGCA 8 cut(s) 53, 139, 281, 326, 365, 595, 644, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 128
HpyF3I CTNAG 1 cut(s) 846
Hsp92II CATG 4 cut(s) 33, 122, 143, 285
KpnI GGTACC 1 cut(s) 752
Kzo9I GATC 3 cut(s) 160, 628, 704
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 7 cut(s) 141, 710, 738, 755, 765, 822, 852
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 5 cut(s) 37, 587, 604, 631, 832
MaeIII GTNAC 1 cut(s) 803
MalI GATC 3 cut(s) 162, 630, 706
MboI GATC 3 cut(s) 160, 628, 704
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 3 cut(s) 160, 628, 704
MhlI GDGCHC 1 cut(s) 759
MluCI AATT 8 cut(s) 299, 310, 421, 433, 538, 550, 645, 815
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 2 cut(s) 285, 507
MroXI GAANNNNTTC 1 cut(s) 819
MseI TTAA 4 cut(s) 146, 198, 777, 886
MslI CAYNNNNRTG 1 cut(s) 331
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 753
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 56, 128
NdeII GATC 3 cut(s) 160, 628, 704
NlaIII CATG 4 cut(s) 33, 122, 143, 285
NlaIV GGNNCC 1 cut(s) 750
NspI RCATGY 2 cut(s) 122, 285
PdmI GAANNNNTTC 1 cut(s) 819
PfeI GAWTC 2 cut(s) 241, 473
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 751
PspEI GGTNACC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 17, 694
PsuI RGATCY 3 cut(s) 160, 628, 704
RsaI GTAC 2 cut(s) 270, 750
RsaNI GTAC 2 cut(s) 269, 749
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 4 cut(s) 146, 198, 777, 886
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 3 cut(s) 160, 628, 704
Sau96I GGNCC 2 cut(s) 17, 694
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 753
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 5 cut(s) 37, 587, 604, 631, 832
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 8 cut(s) 299, 310, 421, 433, 538, 550, 645, 815
SspI AATATT 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 751
TaaI ACNGT 2 cut(s) 108, 355
TaqI TCGA 1 cut(s) 306
TasI AATT 8 cut(s) 299, 310, 421, 433, 538, 550, 645, 815
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 2 cut(s) 241, 473
Tru1I TTAA 4 cut(s) 146, 198, 777, 886
Tru9I TTAA 4 cut(s) 146, 198, 777, 886
TscAI CASTG 2 cut(s) 113, 489
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 6 cut(s) 17, 95, 292, 415, 546, 747
TspRI CASTG 2 cut(s) 113, 489
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 694
XapI RAATTY 2 cut(s) 299, 815
XceI RCATGY 2 cut(s) 122, 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.