Rh7DG025600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000244
Physical Location & Seq
Forward (+)
1969248 .. 1970151
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG025600.1

Sequence Viewer

Length: 450 bp
ATGCTCTGTGGGAGGGATAGAGCTACTGGTGAAGGAACAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAAATGAAAGTCATGTGACTCCCAATTCATATGCCTCAACACATGCAGCAACTTCAACTTGTGATTCACATCCTCCAAATAAGAAAAAGAAAAATGATCCAGTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCTCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGCTCATATGGCAATCTGAAGGACAACCAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

4.92

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 3 cut(s) 71, 227, 359
AcuI CTGAAG 2 cut(s) 78, 450
AfaI GTAC 2 cut(s) 273, 330
AgsI TTSAA 5 cut(s) 77, 141, 223, 322, 373
AluBI AGCT 3 cut(s) 23, 239, 326
AluI AGCT 3 cut(s) 23, 239, 326
Alw26I GTCTC 2 cut(s) 250, 381
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 131, 236
ApoI RAATTY 3 cut(s) 71, 227, 359
AsuHPI GGTGA 1 cut(s) 41
BalI TGGCCA 1 cut(s) 212
BbvI GCAGC 2 cut(s) 143, 248
BcoDI GTCTC 2 cut(s) 250, 381
BisI GCNGC 2 cut(s) 132, 237
BlsI GCNGC 2 cut(s) 133, 238
BmsI GCATC 2 cut(s) 43, 376
BpuEI CTTGAG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse1I ACTGG 2 cut(s) 31, 185
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 2 cut(s) 154, 274
BseJI GATNNNNATC 1 cut(s) 153
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 31, 185
BseXI GCAGC 2 cut(s) 143, 248
BshFI GGCC 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 250, 381
BsnI GGCC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 315
BspPI GGATC 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 2 cut(s) 31, 185
BssECI CCNNGG 1 cut(s) 440
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 302
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 2 cut(s) 154, 274
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 2 cut(s) 250, 381
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 143, 248
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 154, 274
Csp6I GTAC 2 cut(s) 272, 329
CviAII CATG 3 cut(s) 98, 128, 275
CviJI RGCY 4 cut(s) 23, 212, 239, 326
CviKI_1 RGCY 4 cut(s) 23, 212, 239, 326
CviQI GTAC 2 cut(s) 272, 329
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 78, 450
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 3 cut(s) 101, 131, 278
FatI CATG 3 cut(s) 97, 127, 274
FauNDI CATATG 2 cut(s) 115, 419
Fnu4HI GCNGC 2 cut(s) 132, 237
FokI GGATG 2 cut(s) 141, 281
Fsp4HI GCNGC 2 cut(s) 132, 237
GluI GCNGC 2 cut(s) 132, 237
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 3 cut(s) 101, 131, 278
HinfI GANTC 2 cut(s) 103, 149
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 430
HpyAV CCTTC 3 cut(s) 26, 217, 425
HpyCH4V TGCA 2 cut(s) 131, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 3 cut(s) 101, 131, 278
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 2 cut(s) 12, 198
Lsp1109I GCAGC 2 cut(s) 143, 248
LweI GCATC 2 cut(s) 43, 376
MaeIII GTNAC 2 cut(s) 100, 347
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 4 cut(s) 53, 71, 95, 368
MfeI CAATTG 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 7 cut(s) 71, 109, 198, 227, 308, 359, 445
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 6, 130, 168, 259
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 212
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 421
NdeI CATATG 2 cut(s) 115, 419
NdeII GATC 1 cut(s) 181
NlaIII CATG 3 cut(s) 101, 131, 278
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 131
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 2 cut(s) 133, 238
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 347
RsaI GTAC 2 cut(s) 273, 330
RsaNI GTAC 2 cut(s) 272, 329
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 132, 237
Sau3AI GATC 1 cut(s) 181
SchI GAGTC 1 cut(s) 97
SetI ASST 4 cut(s) 25, 221, 241, 328
SfaNI GCATC 2 cut(s) 43, 376
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 7 cut(s) 71, 109, 198, 227, 308, 359, 445
StyI CCWWGG 1 cut(s) 440
TasI AATT 7 cut(s) 71, 109, 198, 227, 308, 359, 445
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 131, 236
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 102, 105, 291
XapI RAATTY 3 cut(s) 71, 227, 359
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.