Rw3G019520
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000244
Physical Location & Seq
Reverse (-)
22323866 .. 22324871
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019520.1

Sequence Viewer

Length: 744 bp
ATGAGTAGACTTGGAGGAAACGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGTTGAAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATATCTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTACGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCATTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGCATCAGAAGATATTCACATCATTGAGAACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAATAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAGAATGGCGTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGCAATAACAGATCTTTCTAGAGAAGAACAAATAAAAGCATGCACTTGGTTTATAGAGAACGACAAACAGTTTCTCATGTTGAAAGAAGTCCCAGTGGAAATGAAAAAGATATGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

247

Amino Acids

27.98

Weight (kDa)

6.77

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 22 - 99 3.8e-12 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AccI GTMKAC 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 2 cut(s) 489, 532
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 4 cut(s) 80, 149, 563, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 6 cut(s) 98, 104, 116, 240, 317, 324
AluI AGCT 6 cut(s) 98, 104, 116, 240, 317, 324
Alw26I GTCTC 2 cut(s) 309, 481
AlwNI CAGNNNCTG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 116
Asp700I GAANNNNTTC 3 cut(s) 194, 408, 570
AsuHPI GGTGA 1 cut(s) 423
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BbvI GCAGC 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 309, 481
BfaI CTAG 2 cut(s) 483, 642
BfmI CTRYAG 1 cut(s) 99
BglII AGATCT 1 cut(s) 634
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 407
BmuI ACTGGG 1 cut(s) 710
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 551
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 394, 716
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 2 cut(s) 394, 716
BseRI GAGGAG 1 cut(s) 483
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 240
BsgI GTGCAG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 309, 481
BsmFI GGGAC 1 cut(s) 698
Bsp143I GATC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 463
BspHI TCATGA 1 cut(s) 307
BsrI ACTGG 2 cut(s) 394, 716
BssMI GATC 1 cut(s) 634
BssNI GRCGYC 1 cut(s) 551
Bst4CI ACNGT 4 cut(s) 138, 176, 281, 693
Bst6I CTCTTC 2 cut(s) 484, 499
BstACI GRCGYC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 1 cut(s) 637
BstMAI GTCTC 2 cut(s) 309, 481
BstMBI GATC 1 cut(s) 634
BstNSI RCATGY 1 cut(s) 666
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 3 cut(s) 286, 387, 723
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 119
CciI TCATGA 1 cut(s) 307
CseI GACGC 1 cut(s) 540
Csp6I GTAC 2 cut(s) 488, 531
CviAII CATG 5 cut(s) 186, 308, 622, 663, 700
CviJI RGCY 8 cut(s) 98, 104, 116, 225, 240, 317, 324, 386
CviKI_1 RGCY 8 cut(s) 98, 104, 116, 225, 240, 317, 324, 386
CviQI GTAC 2 cut(s) 488, 531
DdeI CTNAG 1 cut(s) 450
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
DraI TTTAAA 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 484, 499
EarI CTCTTC 2 cut(s) 484, 499
Eco32I GATATC 1 cut(s) 217
EcoRV GATATC 1 cut(s) 217
FaeI CATG 5 cut(s) 189, 311, 625, 666, 703
FaqI GGGAC 1 cut(s) 698
FatI CATG 5 cut(s) 185, 307, 621, 662, 699
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 483, 642
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 411
HgaI GACGC 1 cut(s) 540
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 5 cut(s) 189, 311, 625, 666, 703
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 2 cut(s) 245, 339
HphI GGTGA 1 cut(s) 423
Hpy166II GTNNAC 2 cut(s) 8, 488
Hpy188I TCNGA 2 cut(s) 403, 453
Hpy188III TCNNGA 3 cut(s) 220, 308, 642
Hpy8I GTNNAC 2 cut(s) 8, 488
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 4 cut(s) 138, 176, 281, 693
HpyCH4V TGCA 2 cut(s) 134, 666
HpyF3I CTNAG 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 5 cut(s) 189, 311, 625, 666, 703
Kzo9I GATC 1 cut(s) 634
LpnPI CCDG 3 cut(s) 226, 375, 729
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 407
MaeI CTAG 2 cut(s) 483, 642
MaeIII GTNAC 1 cut(s) 508
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 7 cut(s) 92, 302, 416, 471, 516, 575, 659
MflI RGATCY 1 cut(s) 634
MluCI AATT 2 cut(s) 204, 346
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 6 cut(s) 8, 16, 259, 388, 501, 504
MroXI GAANNNNTTC 3 cut(s) 194, 408, 570
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 116
NdeII GATC 1 cut(s) 634
NlaIII CATG 5 cut(s) 189, 311, 625, 666, 703
NspI RCATGY 1 cut(s) 666
PaeI GCATGC 1 cut(s) 666
PagI TCATGA 1 cut(s) 307
PdmI GAANNNNTTC 3 cut(s) 194, 408, 570
PfeI GAWTC 2 cut(s) 245, 339
PkrI GCNGC 1 cut(s) 118
PsiI TTATAA 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 2 cut(s) 489, 532
RsaNI GTAC 2 cut(s) 488, 531
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 634
SetI ASST 9 cut(s) 27, 78, 100, 106, 118, 242, 319, 326, 493
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SphI GCATGC 1 cut(s) 666
Sse9I AATT 2 cut(s) 204, 346
SspMI CTAG 2 cut(s) 483, 642
TaaI ACNGT 4 cut(s) 138, 176, 281, 693
TasI AATT 2 cut(s) 204, 346
TfiI GAWTC 2 cut(s) 245, 339
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 3 cut(s) 286, 394, 723
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 5 cut(s) 69, 288, 327, 480, 740
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 3 cut(s) 286, 394, 723
XbaI TCTAGA 1 cut(s) 641
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 3 cut(s) 194, 408, 570
XspI CTAG 2 cut(s) 483, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.