Prupe.5G014200_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000244
Physical Location & Seq
Forward (+)
1549849 .. 1550706
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G014200.1

Sequence Viewer

Length: 738 bp
ATGGGTCACAAAGGAGATGGTGGTTGGAAATCAGTTGCTTATAACACTGCTGCAGCCATATTGTTTGCCCAATATAATATTGAAGTAAGTGCTGATAACATTAAAAATTGTGTCAAGACATGGAAAAGGTTTTATGCCGTAGTCAGTGACATATTAAGTCAGAGTGGATTCAATTGGGATGCAACAAAAAAGATGATCACTATAGATGAAGAGATTTCTCATGAAGATGCTAGAACTTTTCGATATAAAGTAATTGCAAATTGGGATGATATAGTGGATTTATGTGGCAAAGATAGAGCTACTAGAGAAGGTGCTGAAACATGTGCTAGAGCTGTTGAGTTTATGACCCCTGATAGTGAACCCAATAATTTTGTTGACTTGGGTGTTGATACTCAAGGTTTTGAGAATTCTCACATTGATGATGTCTCACCTAACTCTAGCTGTCCAAAGAAAAGAAATCAACCATCTTATGATATTCGCCCACCAAAGAAAAGAGGTACCCCTAATATTTCTGCTGATTCAGTGGCTAAAATGGCTTCATCTTTCAAACAAATTTTCAATGCTACTACACAAAAGCTTGATCCATTAGAAGTATATAATGAAGTGAATGCAATTCCAGAACTTAGTCCAGACGAACAATTGAAGGCATGCACTTGGTTTATAGAAAATGAGAAACAATTTCTCATGTTGAAGACACTTCCAGTTGAGAGAAAAAAGGGAATGGTGTTGATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

246

Amino Acids

27.57

Weight (kDa)

5.54

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 2 cut(s) 406, 552
AfaI GTAC 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 320
AgsI TTSAA 6 cut(s) 83, 172, 547, 559, 643, 691
AluBI AGCT 4 cut(s) 299, 332, 441, 577
AluI AGCT 4 cut(s) 299, 332, 441, 577
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 1 cut(s) 575
ApeKI GCWGC 2 cut(s) 50, 53
ApoI RAATTY 2 cut(s) 406, 552
Asp718I GGTACC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 420
BanI GGYRCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 698
BbvI GCAGC 2 cut(s) 37, 65
BccI CCATC 3 cut(s) 11, 472, 724
BceAI ACGGC 1 cut(s) 122
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 4 cut(s) 231, 303, 327, 438
BfmI CTRYAG 2 cut(s) 51, 201
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
BmiI GGNNCC 1 cut(s) 499
BmsI GCATC 2 cut(s) 169, 217
BpiI GAAGAC 1 cut(s) 698
BpuEI CTTGAG 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 701
BseGI GGATG 2 cut(s) 184, 271
BseNI ACTGG 1 cut(s) 701
BseXI GCAGC 2 cut(s) 37, 65
BshNI GGYRCC 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 613
Bsp143I GATC 2 cut(s) 195, 580
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 1 cut(s) 497
BsrI ACTGG 1 cut(s) 701
BssMI GATC 2 cut(s) 195, 580
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 1 cut(s) 623
BstF5I GGATG 2 cut(s) 184, 271
BstKTI GATC 2 cut(s) 198, 583
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 2 cut(s) 195, 580
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 2 cut(s) 324, 651
BstSFI CTRYAG 2 cut(s) 51, 201
BstV1I GCAGC 2 cut(s) 37, 65
BstV2I GAAGAC 1 cut(s) 698
BtsCI GGATG 2 cut(s) 184, 271
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 45, 151, 528
Cac8I GCNNGC 1 cut(s) 649
CciI TCATGA 1 cut(s) 220
Csp6I GTAC 1 cut(s) 498
CviAII CATG 5 cut(s) 120, 221, 321, 648, 685
CviJI RGCY 7 cut(s) 56, 299, 332, 441, 527, 536, 577
CviKI_1 RGCY 7 cut(s) 56, 299, 332, 441, 527, 536, 577
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 1 cut(s) 623
DpnI GATC 2 cut(s) 197, 582
DpnII GATC 2 cut(s) 195, 580
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 406
FaeI CATG 5 cut(s) 123, 224, 324, 651, 688
FatI CATG 5 cut(s) 119, 220, 320, 647, 684
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 2 cut(s) 191, 278
Fsp4HI GCNGC 2 cut(s) 51, 54
FspBI CTAG 4 cut(s) 231, 303, 327, 438
GluI GCNGC 2 cut(s) 51, 54
Hin1II CATG 5 cut(s) 123, 224, 324, 651, 688
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 2 cut(s) 168, 518
HphI GGTGA 1 cut(s) 420
Hpy166II GTNNAC 2 cut(s) 359, 376
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 4 cut(s) 115, 221, 617, 629
Hpy8I GTNNAC 2 cut(s) 359, 376
HpyAV CCTTC 2 cut(s) 302, 637
HpyCH4V TGCA 5 cut(s) 53, 182, 257, 611, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 1 cut(s) 623
Hsp92II CATG 5 cut(s) 123, 224, 324, 651, 688
KpnI GGTACC 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 2 cut(s) 195, 580
LpnPI CCDG 4 cut(s) 363, 630, 642, 714
Lsp1109I GCAGC 2 cut(s) 37, 65
LweI GCATC 2 cut(s) 169, 217
MaeI CTAG 4 cut(s) 231, 303, 327, 438
MaeIII GTNAC 2 cut(s) 5, 146
MalI GATC 2 cut(s) 197, 582
MboI GATC 2 cut(s) 195, 580
MboII GAAGA 3 cut(s) 221, 236, 703
MfeI CAATTG 2 cut(s) 172, 638
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 1 cut(s) 488
MseI TTAA 2 cut(s) 102, 155
MslI CAYNNNNRTG 2 cut(s) 225, 417
MunI CAATTG 2 cut(s) 172, 638
Mva1269I GAATGC 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeII GATC 2 cut(s) 195, 580
NlaIII CATG 5 cut(s) 123, 224, 324, 651, 688
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 2 cut(s) 5, 146
NspI RCATGY 2 cut(s) 324, 651
PaeI GCATGC 1 cut(s) 651
PagI TCATGA 1 cut(s) 220
PciI ACATGT 1 cut(s) 320
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 2 cut(s) 168, 518
PkrI GCNGC 2 cut(s) 52, 55
PscI ACATGT 1 cut(s) 320
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 499
PstI CTGCAG 1 cut(s) 55
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 2 cut(s) 225, 417
SaqAI TTAA 2 cut(s) 102, 155
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 195, 580
SetI ASST 9 cut(s) 131, 301, 313, 334, 400, 433, 443, 499, 579
SfaNI GCATC 2 cut(s) 169, 217
SfcI CTRYAG 2 cut(s) 51, 201
SmiMI CAYNNNNRTG 2 cut(s) 225, 417
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
SphI GCATGC 1 cut(s) 651
SspI AATATT 2 cut(s) 79, 508
SspMI CTAG 4 cut(s) 231, 303, 327, 438
TaqI TCGA 1 cut(s) 241
TfiI GAWTC 2 cut(s) 168, 518
Tru1I TTAA 2 cut(s) 102, 155
Tru9I TTAA 2 cut(s) 102, 155
TscAI CASTG 3 cut(s) 52, 151, 528
TseFI GTSAC 2 cut(s) 5, 146
TseI GCWGC 2 cut(s) 50, 53
Tsp45I GTSAC 2 cut(s) 5, 146
TspDTI ATGAA 4 cut(s) 222, 237, 528, 615
TspRI CASTG 3 cut(s) 52, 151, 528
XapI RAATTY 2 cut(s) 406, 552
XceI RCATGY 2 cut(s) 324, 651
XspI CTAG 4 cut(s) 231, 303, 327, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.