Rmu_sc0014278.1_g000005
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014278.1
OG0000244
Physical Location & Seq
Reverse (-)
9007 .. 10877
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014278.1_g000005.1.cds

Sequence Viewer

Length: 636 bp
atgatcaccgtcttcaggaggtttcagaaagccaagcggctcgagctatggtggctggagatgaaagatatcggtgttgacctaaactacaccttggatcaggtttttgttgcagcaccatgtaacggtggaggtaagttgcaaagttgccactggcaggtctgggaggaagaggcgaagctaacgccattgcttgcggcccatgccaatatagttttgggtcagaatagtgtggagcttagtgacagatatatgaacattttaatgcaagctagaaaaggaatggataagaagcaaaaggttatgaaaaaggaagaagatggaggcaaatacttgcattggaatccggaaatggattgttcattggctaatattcttagaagtgagagacaatctgggcataaaggtgatggtggctggaaaactgaggcattcacttcggctgcattgaagatgtcagccaagtataatgtacctgtgacgaaagataatgtgaagaatcacctcaaaggttggaaaaggacttatggaatagtttctgatatcctaagccaaagtggctttaattgggatagtgagtgtaagatgctatccgtggatgatgacaatgtatggagtgaatatgcaaaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

211

Amino Acids

24.16

Weight (kDa)

8.56

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 2 cut(s) 37, 197
AclWI GGATC 1 cut(s) 105
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 3 cut(s) 15, 125, 157
AgsI TTSAA 1 cut(s) 451
AluBI AGCT 4 cut(s) 46, 181, 238, 272
AluI AGCT 4 cut(s) 46, 181, 238, 272
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 2 cut(s) 113, 443
Asp700I GAANNNNTTC 1 cut(s) 535
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 419, 494
AvaI CYCGRG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 125, 430
BccI CCATC 2 cut(s) 314, 404
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 558
BisI GCNGC 4 cut(s) 38, 114, 198, 444
BlsI GCNGC 4 cut(s) 39, 115, 199, 445
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 4
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 93, 594
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 125, 157
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 188
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 2 cut(s) 93, 594
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 3 cut(s) 15, 125, 157
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 125, 430
BshFI GGCC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 15, 125, 157
BsmAI GTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 2 cut(s) 3, 97
BspACI CCGC 2 cut(s) 37, 197
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 418
BspEI TCCGGA 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 93, 594
BssMI GATC 2 cut(s) 3, 97
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 10, 128
Bst6I CTCTTC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 195, 270
BstDEI CTNAG 4 cut(s) 239, 377, 426, 548
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 604
BstKTI GATC 2 cut(s) 6, 100
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 3, 97
BstMWI GCNNNNNNNGC 4 cut(s) 43, 52, 203, 558
BstV1I GCAGC 2 cut(s) 125, 430
BstV2I GAAGAC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 195, 270
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 473
CviAII CATG 2 cut(s) 120, 203
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 4 cut(s) 239, 377, 426, 548
DpnI GATC 2 cut(s) 5, 99
DpnII GATC 2 cut(s) 3, 97
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 93
Eco32I GATATC 2 cut(s) 70, 544
Eco88I CYCGRG 1 cut(s) 41
EcoRV GATATC 2 cut(s) 70, 544
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 123, 206
FatI CATG 2 cut(s) 119, 202
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 38, 114, 198, 444
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 4 cut(s) 38, 114, 198, 444
FspBI CTAG 1 cut(s) 273
GluI GCNGC 4 cut(s) 38, 114, 198, 444
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 347
Hin1II CATG 2 cut(s) 123, 206
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 343, 499
HpaII CCGG 1 cut(s) 347
HphI GGTGA 2 cut(s) 419, 494
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 27, 225, 541
Hpy188III TCNNGA 2 cut(s) 16, 347
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 10, 128
HpyCH4V TGCA 6 cut(s) 113, 142, 268, 337, 446, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 52, 203, 558
HpyF3I CTNAG 4 cut(s) 239, 377, 426, 548
Hsp92II CATG 2 cut(s) 123, 206
Kpn2I TCCGGA 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 97
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 41, 86, 139, 143, 148, 360, 381, 403, 489
Lsp1109I GCAGC 2 cut(s) 125, 430
LweI GCATC 1 cut(s) 576
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 122, 242, 478
MalI GATC 2 cut(s) 5, 99
MboI GATC 2 cut(s) 3, 97
MboII GAAGA 6 cut(s) 4, 182, 326, 329, 463, 508
MluCI AATT 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 7 cut(s) 12, 125, 160, 166, 317, 421, 515
MroI TCCGGA 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 2 cut(s) 263, 564
MslI CAYNNNNRTG 2 cut(s) 263, 405
MspI CCGG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 431
MwoI GCNNNNNNNGC 4 cut(s) 43, 52, 203, 558
NdeII GATC 2 cut(s) 3, 97
NlaIII CATG 2 cut(s) 123, 206
NmuCI GTSAC 2 cut(s) 242, 478
PaeR7I CTCGAG 1 cut(s) 41
PctI GAATGC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 2 cut(s) 343, 499
PkrI GCNGC 4 cut(s) 39, 115, 199, 445
PspPI GGNCC 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 41
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
RseI CAYNNNNRTG 2 cut(s) 263, 405
SaqAI TTAA 2 cut(s) 263, 564
SatI GCNGC 4 cut(s) 38, 114, 198, 444
Sau3AI GATC 2 cut(s) 3, 97
Sau96I GGNCC 1 cut(s) 199
SfaNI GCATC 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 263, 405
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 565
SsiI CCGC 2 cut(s) 37, 197
SspI AATATT 1 cut(s) 373
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 10, 128
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 565
TauI GCSGC 2 cut(s) 40, 200
TfiI GAWTC 2 cut(s) 343, 499
Tru1I TTAA 2 cut(s) 263, 564
Tru9I TTAA 2 cut(s) 263, 564
TscAI CASTG 1 cut(s) 158
TseFI GTSAC 2 cut(s) 242, 478
TseI GCWGC 2 cut(s) 113, 443
Tsp45I GTSAC 2 cut(s) 242, 478
TspDTI ATGAA 4 cut(s) 77, 269, 320, 351
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.