Prupe.1G245200_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000244
Physical Location & Seq
Reverse (-)
25875174 .. 25876398
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G245200.1

Sequence Viewer

Length: 948 bp
ATGTTGTTGAAATTATTTCAATTACATAAGATGGCAGAGAAAGCAACCAAACTAAAGCAGAGGAAAAGGAAAGAGAAGCAAGGTAATGAACATGAAGGAGATGAAAAATGTTATTTACGTTGGAACATACAAATGGATCGTTCATTAGCAGAGATACTTAGAGAAGAACGCCAGATGGGTCACAAAGGAGATGGTGGTTGGAAATCAGTTGCTTATAACACTGCTGCAGCCATATTGTCTGCCCAATATAATATTGAAGTAAGTGCTGATAACATTAAAAATCGTGTCAAGACATGGAAAAGGTTTTATGCTGTAGTCAGTGACATATTAAGTCAGAGTGGATTTAGTTGGGATGCAACAAAAAAGATGATCACTATAGATGAAGAGAATGTTTGGAATGAGTATGTGAAGTCTCATGAAGATGCTAGAACTTTTCGATATAAAGTAATTGCAAATTGGGATGATATAGTGGATTTATGTGGCAAAGATAGAGCTACTGGAGAGGGTGCTGAAACATGTTTTGAAGCTGCTGAGGTTATGACCCCTGATAGCGAACCGAATAATTTTGTTGACTTGGGTGCTGATACTCAAGGTTTTGAGAATTCTCACATTGATGATGTCTCACCCAATTCTAGCTGTCCAAAGAAAAGAAATCAACCATCTTCTGAAATTCGCCCACCAAAGAAAAGAGGTACTCCTAATGTTCTTGCTGATTCAGTGGCTAAAATGGCTTCATCGTTCGAACAATTTATCAATGCTACCACACAAAAGCTTGATCCATTAGAAGTATATAATGAAGTTAATGCAATTCCAGAACTTAATCCAGATGAACAATTGAAGGCATGCACTTGGTTTATAGAAAATGAGAAACAATTTCTCATGTTGAAGACACTTCCAGTTGAGAGAAAAAAGGGAATGGTATTGATGTTTATTTCACCAAGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

316

Amino Acids

36.02

Weight (kDa)

6.28

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AclWI GGATC 2 cut(s) 144, 770
AcsI RAATTY 2 cut(s) 601, 669
AfaI GTAC 1 cut(s) 694
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 6 cut(s) 10, 20, 257, 524, 838, 886
AluBI AGCT 4 cut(s) 494, 527, 636, 772
AluI AGCT 4 cut(s) 494, 527, 636, 772
Alw26I GTCTC 2 cut(s) 417, 625
AlwI GGATC 2 cut(s) 144, 770
ApeKI GCWGC 3 cut(s) 224, 227, 527
ApoI RAATTY 2 cut(s) 601, 669
AsuHPI GGTGA 2 cut(s) 615, 927
AsuII TTCGAA 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 893
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 3 cut(s) 211, 239, 514
BccI CCATC 4 cut(s) 25, 169, 185, 667
BclI TGATCA 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 417, 625
BfaI CTAG 2 cut(s) 426, 633
BfmI CTRYAG 3 cut(s) 225, 312, 375
BisI GCNGC 3 cut(s) 225, 228, 528
BlsI GCNGC 3 cut(s) 226, 229, 529
BmsI GCATC 2 cut(s) 343, 412
BpiI GAAGAC 1 cut(s) 893
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 938
Bse1I ACTGG 2 cut(s) 502, 896
BseDI CCNNGG 1 cut(s) 938
BseGI GGATG 2 cut(s) 358, 466
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 502, 896
BseXI GCAGC 3 cut(s) 211, 239, 514
BsmAI GTCTC 2 cut(s) 417, 625
Bsp119I TTCGAA 1 cut(s) 741
Bsp143I GATC 3 cut(s) 136, 369, 775
BspCNI CTCAG 1 cut(s) 523
BspHI TCATGA 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 229
BspPI GGATC 2 cut(s) 144, 770
BspT104I TTCGAA 1 cut(s) 741
BsrI ACTGG 2 cut(s) 502, 896
BssECI CCNNGG 1 cut(s) 938
BssMI GATC 3 cut(s) 136, 369, 775
BssT1I CCWWGG 1 cut(s) 938
Bst6I CTCTTC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 2 cut(s) 158, 531
BstF5I GGATG 2 cut(s) 358, 466
BstKTI GATC 3 cut(s) 139, 372, 778
BstMAI GTCTC 2 cut(s) 417, 625
BstMBI GATC 3 cut(s) 136, 369, 775
BstMWI GCNNNNNNNGC 2 cut(s) 41, 728
BstNSI RCATGY 2 cut(s) 519, 846
BstSFI CTRYAG 3 cut(s) 225, 312, 375
BstV1I GCAGC 3 cut(s) 211, 239, 514
BstV2I GAAGAC 1 cut(s) 893
BtsCI GGATG 2 cut(s) 358, 466
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 3 cut(s) 219, 325, 723
Cac8I GCNNGC 1 cut(s) 844
CciI TCATGA 1 cut(s) 415
Csp6I GTAC 1 cut(s) 693
CviAII CATG 6 cut(s) 92, 294, 416, 516, 843, 880
CviJI RGCY 7 cut(s) 230, 494, 527, 636, 722, 731, 772
CviKI_1 RGCY 7 cut(s) 230, 494, 527, 636, 722, 731, 772
CviQI GTAC 1 cut(s) 693
DdeI CTNAG 2 cut(s) 158, 531
DpnI GATC 3 cut(s) 138, 371, 777
DpnII GATC 3 cut(s) 136, 369, 775
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 938
EcoRI GAATTC 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 938
FaeI CATG 6 cut(s) 95, 297, 419, 519, 846, 883
FatI CATG 6 cut(s) 91, 293, 415, 515, 842, 879
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 3 cut(s) 225, 228, 528
FokI GGATG 2 cut(s) 365, 473
Fsp4HI GCNGC 3 cut(s) 225, 228, 528
FspBI CTAG 2 cut(s) 426, 633
GluI GCNGC 3 cut(s) 225, 228, 528
GsuI CTGGAG 1 cut(s) 519
Hin1II CATG 6 cut(s) 95, 297, 419, 519, 846, 883
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 1 cut(s) 713
HphI GGTGA 2 cut(s) 615, 927
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 2 cut(s) 336, 667
Hpy188III TCNNGA 4 cut(s) 289, 416, 812, 824
Hpy8I GTNNAC 1 cut(s) 571
HpyAV CCTTC 2 cut(s) 89, 832
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 227, 356, 452, 806, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 728
HpyF3I CTNAG 2 cut(s) 158, 531
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 6 cut(s) 95, 297, 419, 519, 846, 883
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 136, 369, 775
LpnPI CCDG 6 cut(s) 185, 483, 558, 825, 837, 909
Lsp1109I GCAGC 3 cut(s) 211, 239, 514
LweI GCATC 2 cut(s) 343, 412
MaeI CTAG 2 cut(s) 426, 633
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 179, 320
MalI GATC 3 cut(s) 138, 371, 777
MboI GATC 3 cut(s) 136, 369, 775
MboII GAAGA 5 cut(s) 176, 395, 431, 654, 898
MfeI CAATTG 1 cut(s) 833
MmeI TCCRAC 2 cut(s) 101, 179
MnlI CCTC 4 cut(s) 54, 496, 526, 683
MseI TTAA 4 cut(s) 276, 329, 801, 819
MslI CAYNNNNRTG 3 cut(s) 131, 420, 612
MunI CAATTG 1 cut(s) 833
MwoI GCNNNNNNNGC 2 cut(s) 41, 728
NdeII GATC 3 cut(s) 136, 369, 775
NlaIII CATG 6 cut(s) 95, 297, 419, 519, 846, 883
NmuCI GTSAC 2 cut(s) 179, 320
NspI RCATGY 2 cut(s) 519, 846
NspV TTCGAA 1 cut(s) 741
PaeI GCATGC 1 cut(s) 846
PagI TCATGA 1 cut(s) 415
PciI ACATGT 1 cut(s) 515
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 3 cut(s) 226, 229, 529
PscI ACATGT 1 cut(s) 515
PsiI TTATAA 1 cut(s) 216
PstI CTGCAG 1 cut(s) 229
RsaI GTAC 1 cut(s) 694
RsaNI GTAC 1 cut(s) 693
RseI CAYNNNNRTG 3 cut(s) 131, 420, 612
SaqAI TTAA 4 cut(s) 276, 329, 801, 819
SatI GCNGC 3 cut(s) 225, 228, 528
Sau3AI GATC 3 cut(s) 136, 369, 775
SfaNI GCATC 2 cut(s) 343, 412
SfcI CTRYAG 3 cut(s) 225, 312, 375
SfuI TTCGAA 1 cut(s) 741
SmiMI CAYNNNNRTG 3 cut(s) 131, 420, 612
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
SphI GCATGC 1 cut(s) 846
SspI AATATT 1 cut(s) 253
SspMI CTAG 2 cut(s) 426, 633
StyI CCWWGG 1 cut(s) 938
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 436, 741
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 4 cut(s) 276, 329, 801, 819
Tru9I TTAA 4 cut(s) 276, 329, 801, 819
TscAI CASTG 3 cut(s) 226, 325, 723
TseFI GTSAC 2 cut(s) 179, 320
TseI GCWGC 3 cut(s) 224, 227, 527
Tsp45I GTSAC 2 cut(s) 179, 320
TspDTI ATGAA 9 cut(s) 102, 108, 117, 132, 396, 432, 723, 810, 843
TspRI CASTG 3 cut(s) 226, 325, 723
XapI RAATTY 2 cut(s) 601, 669
XceI RCATGY 2 cut(s) 519, 846
XspI CTAG 2 cut(s) 426, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.