Rh5CG571800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000244
Physical Location & Seq
Reverse (-)
80929052 .. 80934018
4967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG571800.1

Sequence Viewer

Length: 1212 bp
ATGTCGATGGTTGAAGCTGAAGCTGGAAGGGCTGCATTGGCGGTGGTTAGATTTACCGTTGTTCCATCCCTTCTTCCTAGTAGGAGAGTCCTTAAGGAGATTCCAGACTGTAACCATAAGTTGGTTATCGACTTACACAACCATAGTGATAATGAAAGCTGGGCTAAACAATATGCTGCTCGATTTCAATGCATTATGAATAATGATGTGAGAGACTTGGTGGTTCAAAGTGAAAATGAAAGGAATAGGGATAAGTTACGTATGAAGAGTAAGGGCAAGGAAAAATCTCAAAGTCTTGTACCTGTGTCCAATTTTAACTTAAAGGGCAAGGGCAAAGGAACAGGCACATCTAGGGCATATCTCTCTTGGAACAAAGAAATGGATGATGTACTTGCTAAAGTACTTTATGATCAAATGAACGCAGGACACAAGGCTGATGGAGACTGGAAACCTCAAGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACCGACATCAAAAGTCAAAGCGGCCTTGTTTGGGATGAAGAGAAAAAGATGGTTCCAATCACTGCAGAAAACCTGGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAATTGGGATGATATCGCTATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATATTGGAGATGCTGAAGAAACTATGGAATTTAAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCACACATGCAGCAACTTTGACTTGTGAATCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACCTTGAAAGAGTTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAACCTCAGCAAATTGCAAGTCTTCAAAGTTGTACGCATGTTGATGAGTGGTGACCCCAAAGAATTTTCTCTACTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAGAATGCTCATATGGCAATCTGAAGGTATACTTGTTCCCACTTTGTCTCATGTTTCAGCTGTTGAATATACTTTAGGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

403

Amino Acids

45.28

Weight (kDa)

6.85

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 122 - 219 8.7e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AccI GTMKAC 1 cut(s) 1156
AciI CCGC 2 cut(s) 41, 585
AclWI GGATC 2 cut(s) 896, 909
AcoI YGGCCR 1 cut(s) 930
AcsI RAATTY 3 cut(s) 642, 794, 1079
AcuI CTGAAG 4 cut(s) 39, 801, 1112, 1170
AfaI GTAC 5 cut(s) 300, 390, 402, 993, 1050
AfiI CCNNNNNNNGG 2 cut(s) 121, 595
AflII CTTAAG 1 cut(s) 92
AgsI TTSAA 7 cut(s) 14, 188, 227, 484, 943, 1042, 1193
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 7 cut(s) 17, 23, 159, 458, 746, 959, 1187
AluI AGCT 7 cut(s) 17, 23, 159, 458, 746, 959, 1187
Alw26I GTCTC 7 cut(s) 207, 435, 509, 541, 970, 1101, 1179
AlwI GGATC 2 cut(s) 896, 909
AoxI GGCC 2 cut(s) 586, 930
ApeKI GCWGC 4 cut(s) 32, 176, 851, 956
ApoI RAATTY 3 cut(s) 642, 794, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 1020, 1052
AsuHPI GGTGA 4 cut(s) 556, 764, 935, 1079
BalI TGGCCA 1 cut(s) 932
BamHI GGATCC 1 cut(s) 901
BbsI GAAGAC 1 cut(s) 1030
BbvCI CCTCAGC 1 cut(s) 1022
BbvI GCAGC 4 cut(s) 19, 163, 863, 968
BccI CCATC 3 cut(s) 73, 431, 607
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 1 cut(s) 638
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 7 cut(s) 207, 435, 509, 541, 970, 1101, 1179
BfaI CTAG 3 cut(s) 78, 351, 908
BfmI CTRYAG 1 cut(s) 627
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 5 cut(s) 33, 177, 586, 852, 957
BlsI GCNGC 5 cut(s) 34, 178, 587, 853, 958
BmcAI AGTACT 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 618, 903
BmrFI CCNGG 1 cut(s) 638
BmsI GCATC 2 cut(s) 766, 1096
BpiI GAAGAC 1 cut(s) 1030
Bpu10I CCTNAGC 1 cut(s) 1022
BpuEI CTTGAG 3 cut(s) 438, 518, 945
BsaAI YACGTR 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 509
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 595
Bse1I ACTGG 2 cut(s) 449, 754
BseBI CCWGG 1 cut(s) 638
BseGI GGATG 7 cut(s) 65, 388, 604, 667, 718, 874, 994
BseLI CCNNNNNNNGG 2 cut(s) 121, 595
BseMII CTCAG 1 cut(s) 1036
BseNI ACTGG 2 cut(s) 449, 754
BseXI GCAGC 4 cut(s) 19, 163, 863, 968
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 2 cut(s) 588, 932
BslI CCNNNNNNNGG 2 cut(s) 121, 595
BsmAI GTCTC 7 cut(s) 207, 435, 509, 541, 970, 1101, 1179
BsmI GAATGC 3 cut(s) 490, 655, 1137
BsnI GGCC 2 cut(s) 588, 932
Bso31I GGTCTC 1 cut(s) 509
Bsp1407I TGTACA 1 cut(s) 991
Bsp143I GATC 2 cut(s) 409, 901
BspACI CCGC 2 cut(s) 41, 585
BspANI GGCC 2 cut(s) 588, 932
BspCNI CTCAG 1 cut(s) 1035
BspLI GGNNCC 2 cut(s) 618, 903
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 2 cut(s) 896, 909
BspTI CTTAAG 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 509
BsrGI TGTACA 1 cut(s) 991
BsrI ACTGG 2 cut(s) 449, 754
BssMI GATC 2 cut(s) 409, 901
BssNAI GTATAC 1 cut(s) 1157
Bst1107I GTATAC 1 cut(s) 1157
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 2 cut(s) 58, 110
Bst6I CTCTTC 3 cut(s) 260, 539, 597
BstAFI CTTAAG 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 991
BstBAI YACGTR 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 1022
BstEII GGTNACC 1 cut(s) 1067
BstF5I GGATG 7 cut(s) 65, 388, 604, 667, 718, 874, 994
BstKTI GATC 2 cut(s) 412, 904
BstMAI GTCTC 7 cut(s) 207, 435, 509, 541, 970, 1101, 1179
BstMBI GATC 2 cut(s) 409, 901
BstMWI GCNNNNNNNGC 5 cut(s) 29, 38, 464, 848, 1141
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 3 cut(s) 842, 851, 1057
BstPI GGTNACC 1 cut(s) 1067
BstSCI CCNGG 1 cut(s) 636
BstSFI CTRYAG 1 cut(s) 627
BstSNI TACGTA 1 cut(s) 260
BstV1I GCAGC 4 cut(s) 19, 163, 863, 968
BstV2I GAAGAC 1 cut(s) 1030
BstX2I RGATCY 1 cut(s) 901
BstYI RGATCY 1 cut(s) 901
BstZ17I GTATAC 1 cut(s) 1157
BsuRI GGCC 2 cut(s) 588, 932
BtsCI GGATG 7 cut(s) 65, 388, 604, 667, 718, 874, 994
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 624
Csp6I GTAC 5 cut(s) 299, 389, 401, 992, 1049
CviAII CATG 6 cut(s) 492, 839, 848, 995, 1054, 1178
CviQI GTAC 5 cut(s) 299, 389, 401, 992, 1049
DdeI CTNAG 1 cut(s) 1022
DpnI GATC 2 cut(s) 411, 903
DpnII GATC 2 cut(s) 409, 901
DraI TTTAAA 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 930
Eam1104I CTCTTC 3 cut(s) 260, 539, 597
EarI CTCTTC 3 cut(s) 260, 539, 597
Eco105I TACGTA 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 509
Eco32I GATATC 2 cut(s) 686, 718
Eco57I CTGAAG 4 cut(s) 39, 801, 1112, 1170
Eco91I GGTNACC 1 cut(s) 1067
EcoO65I GGTNACC 1 cut(s) 1067
EcoRII CCWGG 1 cut(s) 636
EcoRV GATATC 2 cut(s) 686, 718
EcoT22I ATGCAT 1 cut(s) 194
FaeI CATG 6 cut(s) 495, 842, 851, 998, 1057, 1181
FalI AAGNNNNNCTT 2 cut(s) 1143, 1175
FatI CATG 6 cut(s) 491, 838, 847, 994, 1053, 1177
FauNDI CATATG 1 cut(s) 1139
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 1156
Fnu4HI GCNGC 5 cut(s) 33, 177, 586, 852, 957
FokI GGATG 7 cut(s) 52, 395, 611, 654, 725, 861, 1001
Fsp4HI GCNGC 5 cut(s) 33, 177, 586, 852, 957
FspBI CTAG 3 cut(s) 78, 351, 908
GluI GCNGC 5 cut(s) 33, 177, 586, 852, 957
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 2 cut(s) 588, 932
Hin1II CATG 6 cut(s) 495, 842, 851, 998, 1057, 1181
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 6 cut(s) 87, 100, 531, 662, 826, 869
HphI GGTGA 4 cut(s) 556, 764, 935, 1079
Hpy166II GTNNAC 1 cut(s) 1157
Hpy188I TCNGA 1 cut(s) 1150
Hpy188III TCNNGA 2 cut(s) 104, 523
Hpy8I GTNNAC 1 cut(s) 1157
HpyAV CCTTC 4 cut(s) 21, 80, 749, 1145
HpyCH4III ACNGT 2 cut(s) 58, 110
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 5 cut(s) 35, 192, 629, 851, 1033
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 38, 464, 848, 1141
HpyF3I CTNAG 1 cut(s) 1022
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 6 cut(s) 495, 842, 851, 998, 1057, 1181
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 2 cut(s) 409, 901
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 4 cut(s) 19, 163, 863, 968
LweI GCATC 2 cut(s) 766, 1096
MaeI CTAG 3 cut(s) 78, 351, 908
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 5 cut(s) 110, 255, 663, 823, 1067
MalI GATC 2 cut(s) 411, 903
MboI GATC 2 cut(s) 409, 901
MboII GAAGA 9 cut(s) 65, 277, 556, 614, 776, 794, 818, 821, 1030
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 1 cut(s) 901
MlsI TGGCCA 1 cut(s) 932
MluCI AATT 8 cut(s) 310, 642, 706, 794, 832, 918, 1028, 1079
MluNI TGGCCA 1 cut(s) 932
MlyI GAGTC 4 cut(s) 96, 525, 671, 820
MnlI CCTC 5 cut(s) 462, 729, 888, 979, 1031
Mox20I TGGCCA 1 cut(s) 932
Mph1103I ATGCAT 1 cut(s) 194
MscI TGGCCA 1 cut(s) 932
MseI TTAA 6 cut(s) 93, 315, 320, 516, 798, 1101
MslI CAYNNNNRTG 2 cut(s) 672, 1058
Msp20I TGGCCA 1 cut(s) 932
MspA1I CMGCKG 1 cut(s) 1187
MspCI CTTAAG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 638
MunI CAATTG 1 cut(s) 918
Mva1269I GAATGC 3 cut(s) 490, 655, 1137
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 5 cut(s) 29, 38, 464, 848, 1141
NdeI CATATG 1 cut(s) 1139
NdeII GATC 2 cut(s) 409, 901
NlaIII CATG 6 cut(s) 495, 842, 851, 998, 1057, 1181
NlaIV GGNNCC 2 cut(s) 618, 903
NmuCI GTSAC 3 cut(s) 663, 823, 1067
NsiI ATGCAT 1 cut(s) 194
NspI RCATGY 3 cut(s) 842, 851, 1057
PctI GAATGC 3 cut(s) 490, 655, 1137
PfeI GAWTC 2 cut(s) 100, 869
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 5 cut(s) 34, 178, 587, 853, 958
PleI GAGTC 4 cut(s) 95, 525, 670, 820
PpsI GAGTC 4 cut(s) 95, 525, 670, 820
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 636
PspEI GGTNACC 1 cut(s) 1067
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 2 cut(s) 618, 903
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 901
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 5 cut(s) 300, 390, 402, 993, 1050
RsaNI GTAC 5 cut(s) 299, 389, 401, 992, 1049
RseI CAYNNNNRTG 2 cut(s) 672, 1058
SaqAI TTAA 6 cut(s) 93, 315, 320, 516, 798, 1101
SatI GCNGC 5 cut(s) 33, 177, 586, 852, 957
Sau3AI GATC 2 cut(s) 409, 901
ScaI AGTACT 1 cut(s) 402
SchI GAGTC 4 cut(s) 96, 525, 671, 820
ScrFI CCNGG 1 cut(s) 638
SfaNI GCATC 2 cut(s) 766, 1096
SfcI CTRYAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 672, 1058
SmlI CTYRAG 4 cut(s) 92, 453, 533, 960
SmoI CTYRAG 4 cut(s) 92, 453, 533, 960
SnaBI TACGTA 1 cut(s) 260
Sse9I AATT 8 cut(s) 310, 642, 706, 794, 832, 918, 1028, 1079
SsiI CCGC 2 cut(s) 41, 585
SspMI CTAG 3 cut(s) 78, 351, 908
StyD4I CCNGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 58, 110
TaiI ACGT 1 cut(s) 262
TaqI TCGA 3 cut(s) 5, 129, 181
TasI AATT 8 cut(s) 310, 642, 706, 794, 832, 918, 1028, 1079
TatI WGTACW 3 cut(s) 388, 400, 991
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 2 cut(s) 100, 869
Tru1I TTAA 6 cut(s) 93, 315, 320, 516, 798, 1101
Tru9I TTAA 6 cut(s) 93, 315, 320, 516, 798, 1101
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 3 cut(s) 663, 823, 1067
TseI GCWGC 4 cut(s) 32, 176, 851, 956
Tsp45I GTSAC 3 cut(s) 663, 823, 1067
TspDTI ATGAA 8 cut(s) 168, 212, 252, 278, 431, 615, 828, 1011
TspRI CASTG 1 cut(s) 631
Van91I CCANNNNNTGG 1 cut(s) 121
Vha464I CTTAAG 1 cut(s) 92
XapI RAATTY 3 cut(s) 642, 794, 1079
XceI RCATGY 3 cut(s) 842, 851, 1057
XmiI GTMKAC 1 cut(s) 1156
XspI CTAG 3 cut(s) 78, 351, 908
ZrmI AGTACT 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.