RchiOBHm_Chr1g0330381
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000244
Physical Location & Seq
Forward (+)
20098482 .. 20099481
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55958

Sequence Viewer

Length: 834 bp
ATGGAGCATGCTTTGGCTAATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATATCTGCTGACAATATAAAAAACCGTGTGAAATCATGGATAAAGTTCTACGGAATTGTTAGTGATATCTTAAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCATTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAATCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCATTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAGAACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAATAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGCGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGCAATAACAGATCTTTCTAGAGAAGAACAAATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAGTTTCTCATGTTGAAAGAAGTCCCAGTGGAAATGAAAAAAGATATGGTGTTGATATTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

277

Amino Acids

31.13

Weight (kDa)

4.78

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 91 2.6e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccII CGCG 1 cut(s) 639
AclWI GGATC 1 cut(s) 832
AfaI GTAC 2 cut(s) 552, 595
AfiI CCNNNNNNNGG 1 cut(s) 325
AflII CTTAAG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 125, 626, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 5 cut(s) 74, 80, 92, 216, 293
AluI AGCT 5 cut(s) 74, 80, 92, 216, 293
Alw26I GTCTC 2 cut(s) 285, 544
AlwI GGATC 1 cut(s) 832
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 92
Asp700I GAANNNNTTC 3 cut(s) 471, 613, 633
AspLEI GCGC 2 cut(s) 641, 731
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 461, 486
AsuII TTCGAA 1 cut(s) 390
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BbvI GCAGC 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 285, 544
BfaI CTAG 2 cut(s) 546, 705
BfmI CTRYAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 196
BglII AGATCT 1 cut(s) 697
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 773
BmsI GCATC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 773
Bpu14I TTCGAA 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 779
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 390, 527
BseNI ACTGG 1 cut(s) 779
BseRI GAGGAG 2 cut(s) 402, 546
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 285, 544
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 390
Bsp143I GATC 2 cut(s) 697, 824
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 391, 526
BspFNI CGCG 1 cut(s) 639
BspHI TCATGA 1 cut(s) 283
BspPI GGATC 1 cut(s) 832
BspT104I TTCGAA 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 779
BssMI GATC 2 cut(s) 697, 824
Bst4CI ACNGT 4 cut(s) 114, 152, 257, 756
Bst6I CTCTTC 2 cut(s) 547, 562
BstAFI CTTAAG 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 9, 727
BstDEI CTNAG 2 cut(s) 399, 513
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 639
BstHHI GCGC 2 cut(s) 641, 731
BstKTI GATC 2 cut(s) 700, 827
BstMAI GTCTC 2 cut(s) 285, 544
BstMBI GATC 2 cut(s) 697, 824
BstNSI RCATGY 2 cut(s) 11, 729
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 697, 824
BstYI RGATCY 2 cut(s) 697, 824
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 262, 396, 786
Cac8I GCNNGC 2 cut(s) 9, 727
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 283
CfoI GCGC 2 cut(s) 641, 731
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 551, 594
CviAII CATG 7 cut(s) 8, 162, 284, 434, 685, 726, 763
CviQI GTAC 2 cut(s) 551, 594
DdeI CTNAG 2 cut(s) 399, 513
DpnI GATC 2 cut(s) 699, 826
DpnII GATC 2 cut(s) 697, 824
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 547, 562
EarI CTCTTC 2 cut(s) 547, 562
Eco32I GATATC 1 cut(s) 193
EcoRV GATATC 1 cut(s) 193
FaeI CATG 7 cut(s) 11, 165, 287, 437, 688, 729, 766
FaqI GGGAC 1 cut(s) 761
FatI CATG 7 cut(s) 7, 161, 283, 433, 684, 725, 762
FauNDI CATATG 1 cut(s) 820
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 546, 705
GlaI GCGC 2 cut(s) 640, 730
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 48
HhaI GCGC 2 cut(s) 641, 731
Hin1II CATG 7 cut(s) 11, 165, 287, 437, 688, 729, 766
Hin6I GCGC 2 cut(s) 639, 729
HinP1I GCGC 2 cut(s) 639, 729
HinfI GANTC 3 cut(s) 221, 315, 409
HphI GGTGA 2 cut(s) 461, 486
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 2 cut(s) 466, 516
Hpy188III TCNNGA 3 cut(s) 29, 284, 705
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 4 cut(s) 114, 152, 257, 756
HpyCH4V TGCA 2 cut(s) 110, 830
HpyF3I CTNAG 2 cut(s) 399, 513
Hsp92II CATG 7 cut(s) 11, 165, 287, 437, 688, 729, 766
HspAI GCGC 2 cut(s) 639, 729
Kzo9I GATC 2 cut(s) 697, 824
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 29, 202, 369, 429, 792
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 470
MaeI CTAG 2 cut(s) 546, 705
MaeIII GTNAC 1 cut(s) 571
MalI GATC 2 cut(s) 699, 826
MboI GATC 2 cut(s) 697, 824
MboII GAAGA 7 cut(s) 278, 437, 479, 534, 579, 638, 722
MflI RGATCY 2 cut(s) 697, 824
MluCI AATT 2 cut(s) 180, 322
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 8 cut(s) 25, 32, 235, 364, 394, 423, 564, 567
MroXI GAANNNNTTC 3 cut(s) 471, 613, 633
MseI TTAA 2 cut(s) 197, 309
MspA1I CMGCKG 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 196
MvnI CGCG 1 cut(s) 639
NdeI CATATG 1 cut(s) 820
NdeII GATC 2 cut(s) 697, 824
NlaIII CATG 7 cut(s) 11, 165, 287, 437, 688, 729, 766
NspI RCATGY 2 cut(s) 11, 729
NspV TTCGAA 1 cut(s) 390
PaeI GCATGC 2 cut(s) 11, 729
PagI TCATGA 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PdmI GAANNNNTTC 3 cut(s) 471, 613, 633
PfeI GAWTC 2 cut(s) 221, 315
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PsiI TTATAA 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 697, 824
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 552, 595
RsaNI GTAC 2 cut(s) 551, 594
SaqAI TTAA 2 cut(s) 197, 309
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 697, 824
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 403
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SphI GCATGC 2 cut(s) 11, 729
Sse9I AATT 2 cut(s) 180, 322
SspMI CTAG 2 cut(s) 546, 705
TaaI ACNGT 4 cut(s) 114, 152, 257, 756
TaqI TCGA 2 cut(s) 390, 438
TasI AATT 2 cut(s) 180, 322
TfiI GAWTC 2 cut(s) 221, 315
Tru1I TTAA 2 cut(s) 197, 309
Tru9I TTAA 2 cut(s) 197, 309
TscAI CASTG 3 cut(s) 262, 403, 786
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 7 cut(s) 264, 303, 438, 543, 606, 803, 807
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 3 cut(s) 262, 403, 786
Vha464I CTTAAG 1 cut(s) 196
XbaI TCTAGA 1 cut(s) 704
XceI RCATGY 2 cut(s) 11, 729
XmnI GAANNNNTTC 3 cut(s) 471, 613, 633
XspI CTAG 2 cut(s) 546, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.