RLG00000029955
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000244
Physical Location & Seq
Reverse (-)
52140332 .. 52141239
908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029955

Sequence Viewer

Length: 456 bp
ATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAAACGAAAGTCATGTGACTCCCAATTCATATGCCTCAACACATGCAGTGACTTCAACTTGTGATTCACATCCTCCAAATAAGAAAAAAAAAAAAAAAAAGGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGCTCATATGGCAATATGAAGGACAACCAAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

152

Amino Acids

16.73

Weight (kDa)

5.28

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 182, 195
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 3 cut(s) 71, 233, 365
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 279, 336
AgsI TTSAA 5 cut(s) 77, 141, 229, 328, 379
AluBI AGCT 3 cut(s) 23, 245, 332
AluI AGCT 3 cut(s) 23, 245, 332
Alw26I GTCTC 2 cut(s) 256, 387
AlwI GGATC 2 cut(s) 182, 195
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 3 cut(s) 71, 233, 365
AsuHPI GGTGA 1 cut(s) 41
BalI TGGCCA 1 cut(s) 218
BamHI GGATCC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 256, 387
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 2 cut(s) 43, 382
BpuEI CTTGAG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse1I ACTGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 2 cut(s) 154, 280
BseJI GATNNNNATC 1 cut(s) 153
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 256, 387
BsnI GGCC 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 187
BspANI GGCC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 2 cut(s) 182, 195
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 308
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 2 cut(s) 154, 280
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 256, 387
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 154, 280
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Csp6I GTAC 2 cut(s) 278, 335
CviAII CATG 3 cut(s) 98, 128, 281
CviJI RGCY 4 cut(s) 23, 218, 245, 332
CviKI_1 RGCY 4 cut(s) 23, 218, 245, 332
CviQI GTAC 2 cut(s) 278, 335
DdeI CTNAG 1 cut(s) 308
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 3 cut(s) 101, 131, 284
FatI CATG 3 cut(s) 97, 127, 280
FauNDI CATATG 2 cut(s) 115, 425
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 2 cut(s) 141, 287
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 3 cut(s) 101, 131, 284
HinfI GANTC 2 cut(s) 103, 149
HphI GGTGA 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 26, 223, 431
HpyCH4V TGCA 2 cut(s) 131, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 3 cut(s) 101, 131, 284
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 2 cut(s) 43, 382
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 3 cut(s) 100, 133, 353
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 4 cut(s) 53, 71, 95, 374
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 7 cut(s) 71, 109, 204, 233, 314, 365, 451
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 6, 130, 168, 265
Mox20I TGGCCA 1 cut(s) 218
MscI TGGCCA 1 cut(s) 218
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 218
MunI CAATTG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeI CATATG 2 cut(s) 115, 425
NdeII GATC 1 cut(s) 187
NlaIII CATG 3 cut(s) 101, 131, 284
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 100, 133
NspI RCATGY 1 cut(s) 131
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 279, 336
RsaNI GTAC 2 cut(s) 278, 335
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 97
SetI ASST 4 cut(s) 25, 227, 247, 334
SfaNI GCATC 2 cut(s) 43, 382
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 7 cut(s) 71, 109, 204, 233, 314, 365, 451
SspMI CTAG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 446
TasI AATT 7 cut(s) 71, 109, 204, 233, 314, 365, 451
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 100, 133
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 2 cut(s) 100, 133
TspDTI ATGAA 3 cut(s) 102, 297, 450
TspRI CASTG 1 cut(s) 138
XapI RAATTY 3 cut(s) 71, 233, 365
XceI RCATGY 1 cut(s) 131
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.