Rmu_sc0004039.1_g000001

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004039.1
OG0000244
Physical Location & Seq
Forward (+)
1 .. 10340
10340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004039.1_g000001.1.cds

Sequence Viewer

Length: 1077 bp
acctttggaggggctgccaaggtgtccgttgatgaatgggacaattgggcgaggaatcagcttatggctactggctctgacttgcttggaaaggtctataatattcagtatataatttatgcaaagatattggtcatgaagatgaaagatttgttatttgaaggaagtttgtcttgtgcatatggaattgggagcctttcatggtggctcgctagggtcacctttctccatcagcgcattctcgatgagtggtcttcatctctgttcaaccttttgcatgtctttacaagtgaaactttgaatcattttggcacgttggagaaagtaacaagttattggggtaacgatttgcgtaatggcgagggatcgacactcgtctcagtgattcatctggaagctggaatgatggaatacatctatgcacgtgttgattcatgcaggttgcattttgaatcagctgaagcagcagctggtgttaagctttcagttaccggggttcttggcttccgtaccatacatcagtctcatgatgaagctataagctttcggtttaaaagaatcctaaattgggatgatatagttgatttgtgtggcaaagatagagccactggagagggtgctgaaacaggtttcgaagccactgaggttatgactcctcctgctaatgaagataatcatgtcgatttggaaggtgatgaccaagcatcagaagatattcacatcattgagaacatttcaccgaaccaagcaagttctcagaaaaagagaaatgaagcaatagtctcttctagtgtacctcctccaaagagaagagttacaactaaagatgtcttgggtacttctgtggatacaatggcttcatcttttgaagaactcattcgtgctactacaaaaagtcttgccccgaaagatgtatggacagaaatcatggcaataacagatctttctagagaagaacaaataaaagcatgcgcttggtttatagagaacgacaaacagtttctcatgttgaaagaagtcccagtggaaatgaaaaaagatatggtgttgatgtttatttcatatggatctgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

358

Amino Acids

40.08

Weight (kDa)

5.04

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 429
AclWI GGATC 2 cut(s) 373, 1075
AcuI CTGAAG 1 cut(s) 480
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 3 cut(s) 511, 795, 838
AfiI CCNNNNNNNGG 2 cut(s) 9, 568
AflIII ACRYGT 1 cut(s) 424
AgsI TTSAA 6 cut(s) 161, 268, 301, 452, 869, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 550, 582
AluBI AGCT 7 cut(s) 61, 398, 458, 470, 481, 536, 543
AluI AGCT 7 cut(s) 61, 398, 458, 470, 481, 536, 543
Alw26I GTCTC 3 cut(s) 382, 528, 787
AlwI GGATC 2 cut(s) 373, 1075
AlwNI CAGNNNCTG 1 cut(s) 470
ApeKI GCWGC 3 cut(s) 14, 464, 467
Asp700I GAANNNNTTC 2 cut(s) 714, 876
AspLEI GCGC 2 cut(s) 237, 974
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 3 cut(s) 211, 704, 729
AsuII TTCGAA 1 cut(s) 633
BaeI ACNNNNGTAYC 2 cut(s) 828, 861
BbrPI CACGTG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 476, 479
BccI CCATC 2 cut(s) 237, 400
BciVI GTATCC 1 cut(s) 841
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 382, 528, 787
BfaI CTAG 3 cut(s) 213, 789, 948
BfuAI ACCTGC 1 cut(s) 429
BfuI GTATCC 1 cut(s) 841
BglII AGATCT 1 cut(s) 940
BisI GCNGC 3 cut(s) 15, 465, 468
BlsI GCNGC 3 cut(s) 16, 466, 469
Bme1390I CCNGG 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 493
BmrI ACTGGG 1 cut(s) 1016
BmsI GCATC 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 1016
BoxI GACNNNNGTC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 18, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 9, 568
Bse1I ACTGG 3 cut(s) 76, 613, 1022
BseDI CCNNGG 2 cut(s) 18, 492
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 2 cut(s) 9, 568
BseMII CTCAG 3 cut(s) 393, 633, 770
BseNI ACTGG 3 cut(s) 76, 613, 1022
BseRI GAGGAG 2 cut(s) 645, 789
BseXI GCAGC 2 cut(s) 476, 479
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 2 cut(s) 53, 1004
BslI CCNNNNNNNGG 2 cut(s) 9, 568
BsmAI GTCTC 3 cut(s) 382, 528, 787
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 53, 1004
BsmI GAATGC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 633
Bsp143I GATC 3 cut(s) 365, 940, 1067
BspCNI CTCAG 3 cut(s) 392, 634, 769
BspHI TCATGA 2 cut(s) 135, 526
BspLI GGNNCC 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 2 cut(s) 373, 1075
BspT104I TTCGAA 1 cut(s) 633
BsrI ACTGG 3 cut(s) 76, 613, 1022
BssECI CCNNGG 2 cut(s) 18, 492
BssMI GATC 3 cut(s) 365, 940, 1067
BssT1I CCWWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 999
Bst6I CTCTTC 2 cut(s) 790, 805
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 210, 970
BstDEI CTNAG 3 cut(s) 379, 642, 756
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 1 cut(s) 577
BstHHI GCGC 2 cut(s) 237, 974
BstKTI GATC 3 cut(s) 368, 943, 1070
BstMAI GTCTC 3 cut(s) 382, 528, 787
BstMBI GATC 3 cut(s) 365, 940, 1067
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNSI RCATGY 2 cut(s) 281, 972
BstPAI GACNNNNGTC 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 491
BstV1I GCAGC 2 cut(s) 476, 479
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 2 cut(s) 940, 1067
BstYI RGATCY 2 cut(s) 940, 1067
BsuI GTATCC 1 cut(s) 841
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 4 cut(s) 387, 606, 639, 1029
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 210, 970
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 2 cut(s) 135, 526
CfoI GCGC 2 cut(s) 237, 974
Csp6I GTAC 3 cut(s) 510, 794, 837
CviAII CATG 9 cut(s) 136, 201, 278, 435, 527, 677, 928, 969, 1006
CviQI GTAC 3 cut(s) 510, 794, 837
DdeI CTNAG 3 cut(s) 379, 642, 756
DpnI GATC 3 cut(s) 367, 942, 1069
DpnII GATC 3 cut(s) 365, 940, 1067
DraI TTTAAA 1 cut(s) 553
Eam1104I CTCTTC 2 cut(s) 790, 805
EarI CTCTTC 2 cut(s) 790, 805
Eco130I CCWWGG 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 480
Eco72I CACGTG 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 9 cut(s) 139, 204, 281, 438, 530, 680, 931, 972, 1009
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 280, 312
FaqI GGGAC 2 cut(s) 53, 1004
FatI CATG 9 cut(s) 135, 200, 277, 434, 526, 676, 927, 968, 1005
FauNDI CATATG 2 cut(s) 181, 1063
Fnu4HI GCNGC 3 cut(s) 15, 465, 468
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 3 cut(s) 15, 465, 468
FspBI CTAG 3 cut(s) 213, 789, 948
GlaI GCGC 2 cut(s) 236, 973
GluI GCNGC 3 cut(s) 15, 465, 468
GsuI CTGGAG 1 cut(s) 630
HapII CCGG 1 cut(s) 492
HhaI GCGC 2 cut(s) 237, 974
Hin1II CATG 9 cut(s) 139, 204, 281, 438, 530, 680, 931, 972, 1009
Hin6I GCGC 2 cut(s) 235, 972
HinP1I GCGC 2 cut(s) 235, 972
HindIII AAGCTT 2 cut(s) 479, 541
HinfI GANTC 7 cut(s) 55, 301, 385, 431, 452, 558, 652
HpaII CCGG 1 cut(s) 492
HphI GGTGA 3 cut(s) 211, 704, 729
Hpy166II GTNNAC 1 cut(s) 794
Hpy188I TCNGA 3 cut(s) 79, 709, 759
Hpy188III TCNNGA 5 cut(s) 136, 242, 392, 527, 948
Hpy8I GTNNAC 1 cut(s) 794
HpyAV CCTTC 2 cut(s) 155, 683
HpyCH4III ACNGT 1 cut(s) 999
HpyCH4IV ACGT 2 cut(s) 314, 424
HpyCH4V TGCA 7 cut(s) 122, 179, 277, 422, 438, 445, 1073
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 379, 642, 756
HpySE526I ACGT 2 cut(s) 314, 424
Hsp92II CATG 9 cut(s) 139, 204, 281, 438, 530, 680, 931, 972, 1009
HspAI GCGC 2 cut(s) 235, 972
Kzo9I GATC 3 cut(s) 365, 940, 1067
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 2 cut(s) 476, 479
LweI GCATC 1 cut(s) 713
MaeI CTAG 3 cut(s) 213, 789, 948
MaeII ACGT 2 cut(s) 314, 424
MaeIII GTNAC 5 cut(s) 217, 325, 341, 487, 814
MalI GATC 3 cut(s) 367, 942, 1069
MboI GATC 3 cut(s) 365, 940, 1067
MboII GAAGA 8 cut(s) 151, 246, 680, 722, 777, 822, 881, 965
MfeI CAATTG 1 cut(s) 43
MflI RGATCY 2 cut(s) 940, 1067
MluCI AATT 4 cut(s) 43, 114, 186, 565
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 7 cut(s) 45, 355, 607, 637, 666, 807, 810
MroXI GAANNNNTTC 2 cut(s) 714, 876
MseI TTAA 2 cut(s) 477, 552
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 458, 470
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 493
MunI CAATTG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 464
NciI CCSGG 1 cut(s) 493
NdeI CATATG 2 cut(s) 181, 1063
NdeII GATC 3 cut(s) 365, 940, 1067
NlaIII CATG 9 cut(s) 139, 204, 281, 438, 530, 680, 931, 972, 1009
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 2 cut(s) 281, 972
NspV TTCGAA 1 cut(s) 633
PaeI GCATGC 1 cut(s) 972
PagI TCATGA 2 cut(s) 135, 526
PctI GAATGC 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 714, 876
PfeI GAWTC 6 cut(s) 55, 301, 385, 431, 452, 558
PkrI GCNGC 3 cut(s) 16, 466, 469
PleI GAGTC 1 cut(s) 646
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 425
PshAI GACNNNNGTC 1 cut(s) 374
PspCI CACGTG 1 cut(s) 425
PspEI GGTNACC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 940, 1067
PvuII CAGCTG 2 cut(s) 458, 470
RsaI GTAC 3 cut(s) 511, 795, 838
RsaNI GTAC 3 cut(s) 510, 794, 837
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 477, 552
SatI GCNGC 3 cut(s) 15, 465, 468
Sau3AI GATC 3 cut(s) 365, 940, 1067
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 493
SfaNI GCATC 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 140
SphI GCATGC 1 cut(s) 972
Sse9I AATT 4 cut(s) 43, 114, 186, 565
SspI AATATT 1 cut(s) 103
SspMI CTAG 3 cut(s) 213, 789, 948
StyD4I CCNGG 1 cut(s) 491
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 999
TaiI ACGT 2 cut(s) 317, 427
TaqI TCGA 4 cut(s) 243, 368, 633, 681
TasI AATT 4 cut(s) 43, 114, 186, 565
TfiI GAWTC 6 cut(s) 55, 301, 385, 431, 452, 558
Tru1I TTAA 2 cut(s) 477, 552
Tru9I TTAA 2 cut(s) 477, 552
TscAI CASTG 4 cut(s) 387, 613, 646, 1029
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 3 cut(s) 14, 464, 467
Tsp45I GTSAC 1 cut(s) 217
TspGWI ACGGA 2 cut(s) 16, 497
TspRI CASTG 4 cut(s) 387, 613, 646, 1029
XbaI TCTAGA 1 cut(s) 947
XceI RCATGY 2 cut(s) 281, 972
XmnI GAANNNNTTC 2 cut(s) 714, 876
XspI CTAG 3 cut(s) 213, 789, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.