FvH4_1g20120
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000244
Physical Location & Seq
Reverse (-)
12320592 .. 12321626
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20120.t1

Sequence Viewer

Length: 783 bp
ATGAGTAATCCTAGAGGAAGTGGGATCAAAGATCAAAAACTACCCACTGTCAAGAGTGAAGGAAATGGCAAAGGAAAGACTGAAGATAATATAAAAAATCGGGTGAAGTCATGGAAAAAGTATTATGGAGTCGTGAGTGATATCTTGAGCCAAAGTGGATTTAGTTGGGATTTCTTGACACAGATGATAAACGTTGATGAAAATAGAGTATGGGAAGAATATGTAAAGTCCCATAATGATGCTGTAAGTTTTCGATATAAGAGAATCCCAAATTGGGATGATATAGTTGATCTGTGTGGCAAAGATAGAGCCACAGGAGAGGGCGCTGAAACTGGTTTTGAAGCCACTGAGGTAATGACTCCTCCTGCTAGTGAGCATAATCATGTCGATTTGGAAAATGATGACCAAGTTTTTGGAGATATTCACATTATTGATGACAATTCACCCGACCAAGCAATTGCAAAGAAAAAGAGAAATGAAACAACACCTTCTTTTAGCGTCCCTCCTCAAAAGAAAAAAGTTACAACTAAAGATGTTTTGGGTACTTCGGTGGATAGAATGGCTTCATCATTTGAAGAATTTATTCATGCAACTACTAAAAATCTTGCCCCGAAAGATGTATGGAAGGAAATTATGGCAATACTAGATCTCTCTAGAGAAGAACAAATAAAAGCATGTGCTTGGTTCATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTCCCAATGGAGATGAAAAAAGACATGGCATTGATGTTTATTTCAAATCTATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

261

Amino Acids

29.54

Weight (kDa)

5.39

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 22 - 74 1.7e-08 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 192
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 4 cut(s) 341, 575, 718, 768
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AlwI GGATC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 395, 427
Asp700I GAANNNNTTC 2 cut(s) 562, 582
AspLEI GCGC 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 115, 435
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BfaI CTAG 4 cut(s) 12, 369, 644, 654
BfoI RGCGCY 1 cut(s) 327
BglII AGATCT 1 cut(s) 646
BmsI GCATC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 2 cut(s) 351, 495
BslFI GGGAC 3 cut(s) 214, 485, 710
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 3 cut(s) 214, 485, 710
Bsp143I GATC 4 cut(s) 24, 31, 289, 646
BspCNI CTCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 337
BssMI GATC 4 cut(s) 24, 31, 289, 646
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 4 cut(s) 27, 34, 292, 649
BstMBI GATC 4 cut(s) 24, 31, 289, 646
BstNSI RCATGY 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 1 cut(s) 646
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 45, 345
CfoI GCGC 1 cut(s) 326
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 543
CviAII CATG 6 cut(s) 111, 383, 587, 675, 712, 748
CviJI RGCY 4 cut(s) 150, 311, 344, 563
CviKI_1 RGCY 4 cut(s) 150, 311, 344, 563
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 1 cut(s) 348
DpnI GATC 4 cut(s) 26, 33, 291, 648
DpnII GATC 4 cut(s) 24, 31, 289, 646
Eco32I GATATC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 142
FaeI CATG 6 cut(s) 114, 386, 590, 678, 715, 751
FaqI GGGAC 3 cut(s) 214, 485, 710
FatI CATG 6 cut(s) 110, 382, 586, 674, 711, 747
FokI GGATG 1 cut(s) 290
FspBI CTAG 4 cut(s) 12, 369, 644, 654
GlaI GCGC 1 cut(s) 325
HaeII RGCGCY 1 cut(s) 327
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 326
Hin1II CATG 6 cut(s) 114, 386, 590, 678, 715, 751
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 3 cut(s) 129, 264, 358
HphI GGTGA 2 cut(s) 115, 435
Hpy188III TCNNGA 5 cut(s) 52, 133, 145, 175, 654
HpyAV CCTTC 4 cut(s) 53, 498, 619, 712
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 461, 590, 779
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 6 cut(s) 114, 386, 590, 678, 715, 751
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 4 cut(s) 24, 31, 289, 646
LpnPI CCDG 3 cut(s) 300, 318, 378
LweI GCATC 1 cut(s) 229
MaeI CTAG 4 cut(s) 12, 369, 644, 654
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 520
MalI GATC 4 cut(s) 26, 33, 291, 648
MboI GATC 4 cut(s) 24, 31, 289, 646
MboII GAAGA 4 cut(s) 95, 227, 587, 671
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 646
MluCI AATT 6 cut(s) 271, 439, 456, 578, 630, 704
MlyI GAGTC 2 cut(s) 138, 352
MnlI CCTC 6 cut(s) 8, 313, 343, 372, 513, 516
MroXI GAANNNNTTC 2 cut(s) 562, 582
MslI CAYNNNNRTG 2 cut(s) 237, 381
MunI CAATTG 1 cut(s) 456
NdeII GATC 4 cut(s) 24, 31, 289, 646
NlaIII CATG 6 cut(s) 114, 386, 590, 678, 715, 751
NspI RCATGY 1 cut(s) 678
PdmI GAANNNNTTC 2 cut(s) 562, 582
PfeI GAWTC 1 cut(s) 264
PleI GAGTC 2 cut(s) 137, 352
PpsI GAGTC 2 cut(s) 137, 352
Psp1406I AACGTT 1 cut(s) 192
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
RseI CAYNNNNRTG 2 cut(s) 237, 381
Sau3AI GATC 4 cut(s) 24, 31, 289, 646
SchI GAGTC 2 cut(s) 138, 352
SetI ASST 3 cut(s) 195, 354, 490
SfaNI GCATC 1 cut(s) 229
SmiMI CAYNNNNRTG 2 cut(s) 237, 381
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 6 cut(s) 271, 439, 456, 578, 630, 704
SspMI CTAG 4 cut(s) 12, 369, 644, 654
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 253, 387
TasI AATT 6 cut(s) 271, 439, 456, 578, 630, 704
TfiI GAWTC 1 cut(s) 264
TscAI CASTG 2 cut(s) 52, 352
TspDTI ATGAA 6 cut(s) 213, 492, 555, 575, 676, 752
TspRI CASTG 2 cut(s) 52, 352
XapI RAATTY 1 cut(s) 578
XbaI TCTAGA 1 cut(s) 653
XceI RCATGY 1 cut(s) 678
XmnI GAANNNNTTC 2 cut(s) 562, 582
XspI CTAG 4 cut(s) 12, 369, 644, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.