RLG00000013816
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000244
Physical Location & Seq
Reverse (-)
41723115 .. 41724552
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013816

Sequence Viewer

Length: 471 bp
ATGCTATGTGGGAAGGATAGAGTTACTGGTGAAGGAGCAGAAGACGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCTCAACACATGCAACAACTTCAACTTGTGATCCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCCCCACAACTTAAAGGAGAGGATGTACATGAAGTGGTTTCTAAATCTCTTAATGATGCTGAAAAGAATGAGTGGATAAGAATGCTCGTATGGCAATCTGAAGGGAATGTCAGGAGGGAAATGGTGAAGATAGAAGTGGAGGTGGTGTTCAAGGGTCGAAAGGGCAACCAAGGAATAAAGAGTGAGCATGACAATTTGAATTCGCATGGGATGGAATTATGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

157

Amino Acids

17.37

Weight (kDa)

5.07

Isoelectric Point (pI)

23.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 140, 173, 186
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 71, 224, 442
AcuI CTGAAG 2 cut(s) 78, 363
AfaI GTAC 1 cut(s) 270
AgsI TTSAA 5 cut(s) 77, 138, 220, 394, 442
AloI GAACNNNNNNTCC 2 cut(s) 374, 406
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 3 cut(s) 140, 173, 186
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 3 cut(s) 71, 224, 442
AsuHPI GGTGA 2 cut(s) 41, 379
BalI TGGCCA 1 cut(s) 209
BamHI GGATCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 2 cut(s) 43, 289
BpiI GAAGAC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 412
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 374, 404
Bse1I ACTGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 3 cut(s) 151, 271, 459
BseJI GATNNNNATC 1 cut(s) 150
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 2 cut(s) 145, 178
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 3 cut(s) 140, 173, 186
BsrGI TGTACA 1 cut(s) 268
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 2 cut(s) 145, 178
BssT1I CCWWGG 1 cut(s) 412
BstAUI TGTACA 1 cut(s) 268
BstF5I GGATG 3 cut(s) 151, 271, 459
BstKTI GATC 2 cut(s) 148, 181
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 145, 178
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNSI RCATGY 2 cut(s) 116, 128
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 3 cut(s) 151, 271, 459
Csp6I GTAC 1 cut(s) 269
CviAII CATG 5 cut(s) 113, 125, 272, 431, 449
CviJI RGCY 2 cut(s) 209, 236
CviKI_1 RGCY 2 cut(s) 209, 236
CviQI GTAC 1 cut(s) 269
DpnI GATC 2 cut(s) 147, 180
DpnII GATC 2 cut(s) 145, 178
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 412
Eco57I CTGAAG 2 cut(s) 78, 363
EcoRI GAATTC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 5 cut(s) 116, 128, 275, 434, 452
FatI CATG 5 cut(s) 112, 124, 271, 430, 448
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 138, 278, 466
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 185
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 5 cut(s) 116, 128, 275, 434, 452
HinfI GANTC 1 cut(s) 100
HphI GGTGA 2 cut(s) 41, 379
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 355
HpyAV CCTTC 4 cut(s) 7, 26, 214, 338
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 5 cut(s) 116, 128, 275, 434, 452
Kzo9I GATC 2 cut(s) 145, 178
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 2 cut(s) 12, 340
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 43, 289
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 22, 97
MalI GATC 2 cut(s) 147, 180
MboI GATC 2 cut(s) 145, 178
MboII GAAGA 4 cut(s) 53, 71, 95, 382
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 7 cut(s) 71, 106, 195, 224, 436, 442, 458
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 5 cut(s) 127, 165, 256, 351, 376
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 2 cut(s) 255, 294
Msp20I TGGCCA 1 cut(s) 209
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 2 cut(s) 145, 178
NlaIII CATG 5 cut(s) 116, 128, 275, 434, 452
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 2 cut(s) 116, 128
PctI GAATGC 1 cut(s) 330
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 255, 294
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 145, 178
SchI GAGTC 1 cut(s) 94
SetI ASST 4 cut(s) 48, 218, 238, 387
SfaNI GCATC 2 cut(s) 43, 289
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 7 cut(s) 71, 106, 195, 224, 436, 442, 458
SspMI CTAG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 412
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 400
TasI AATT 7 cut(s) 71, 106, 195, 224, 436, 442, 458
TatI WGTACW 1 cut(s) 268
Tru1I TTAA 2 cut(s) 255, 294
Tru9I TTAA 2 cut(s) 255, 294
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 102, 288
XapI RAATTY 3 cut(s) 71, 224, 442
XceI RCATGY 2 cut(s) 116, 128
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.