RchiOBHm_Chr4g0405761
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000244
Physical Location & Seq
Reverse (-)
26483720 .. 26484462
743 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37722

Sequence Viewer

Length: 669 bp
ATGATTGCAGGACACAAGGCTGATGGAGATTGGAAACCACAGGCTTATCAAGCAATAGTGGATAAGTTGAATGCTACATGGCAACTTGATCTGACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCATCGACATCAGAAGTCAAAGTGGGTTTGTTTGGGATGAAGAGAAAAAGGTGGTTCCAATCACTGCAGAAAACCTGGAAATTTGGAATGTTTACATTGAGTCACATCCTAATGCTAAAAGATATCAAAACAAGTCAATAGAGAACTGGGATGATATTGCTATGCTATGTGGGAGGGATAGAGCTACTAGTGAAGGAGCAGAAGATGTTGGAGATGCTAAACAAACTATGGAATTTGAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCAGCCACGTCAACTTGTGATTCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACATTGAAGGAATTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGAAAACCTCAGCAAATTGCAAGTTTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCGAAGAATTCTCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

222

Amino Acids

25.02

Weight (kDa)

5.9

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 4 - 81 3.2e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 473, 486
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 4 cut(s) 228, 380, 524, 655
AfaI GTAC 2 cut(s) 570, 627
AgsI TTSAA 4 cut(s) 70, 386, 520, 619
AhlI ACTAGT 1 cut(s) 335
AjiI CACGTC 1 cut(s) 435
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 332, 536, 623
AluI AGCT 3 cut(s) 332, 536, 623
Alw26I GTCTC 2 cut(s) 127, 547
AlwI GGATC 2 cut(s) 473, 486
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 428, 533
ApoI RAATTY 4 cut(s) 228, 380, 524, 655
AsuHPI GGTGA 1 cut(s) 512
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 1 cut(s) 478
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 440, 545
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 127, 547
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 2 cut(s) 336, 485
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 429, 534
BlsI GCNGC 2 cut(s) 430, 535
Bme1390I CCNGG 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 204, 480
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 104, 522
BsaBI GATNNNNATC 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bse1I ACTGG 1 cut(s) 299
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 1 cut(s) 224
BseGI GGATG 5 cut(s) 190, 253, 304, 451, 571
BseJI GATNNNNATC 1 cut(s) 450
BseMII CTCAG 1 cut(s) 613
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 440, 545
BshFI GGCC 1 cut(s) 509
BsmAI GTCTC 2 cut(s) 127, 547
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 509
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 2 cut(s) 88, 478
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 204, 480
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 2 cut(s) 473, 486
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 1 cut(s) 299
BssMI GATC 2 cut(s) 88, 478
Bst2UI CCWGG 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 125, 183
BstAUI TGTACA 1 cut(s) 568
BstDEI CTNAG 1 cut(s) 599
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 5 cut(s) 190, 253, 304, 451, 571
BstKTI GATC 2 cut(s) 91, 481
BstMAI GTCTC 2 cut(s) 127, 547
BstMBI GATC 2 cut(s) 88, 478
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 428
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 440, 545
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BsuRI GGCC 1 cut(s) 509
BtrI CACGTC 1 cut(s) 435
BtsCI GGATG 5 cut(s) 190, 253, 304, 451, 571
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Csp6I GTAC 2 cut(s) 569, 626
CviAII CATG 3 cut(s) 78, 425, 572
CviJI RGCY 8 cut(s) 20, 44, 125, 332, 431, 509, 536, 623
CviKI_1 RGCY 8 cut(s) 20, 44, 125, 332, 431, 509, 536, 623
CviQI GTAC 2 cut(s) 569, 626
DdeI CTNAG 1 cut(s) 599
DpnI GATC 2 cut(s) 90, 480
DpnII GATC 2 cut(s) 88, 478
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 125, 183
EarI CTCTTC 2 cut(s) 125, 183
Eco32I GATATC 1 cut(s) 272
Eco91I GGTNACC 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 272
FaeI CATG 3 cut(s) 81, 428, 575
FaiI YATR 9 cut(s) 79, 141, 311, 316, 377, 426, 530, 573, 632
FatI CATG 3 cut(s) 77, 424, 571
Fnu4HI GCNGC 2 cut(s) 429, 534
FokI GGATG 5 cut(s) 197, 240, 311, 438, 578
Fsp4HI GCNGC 2 cut(s) 429, 534
FspBI CTAG 2 cut(s) 336, 485
GluI GCNGC 2 cut(s) 429, 534
HaeIII GGCC 1 cut(s) 509
Hin1II CATG 3 cut(s) 81, 428, 575
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 4 cut(s) 117, 248, 412, 446
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 241, 438
Hpy188I TCNGA 2 cut(s) 93, 161
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 241, 438
HpyAV CCTTC 2 cut(s) 335, 514
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 8, 215, 428, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 599
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 3 cut(s) 81, 428, 575
Kzo9I GATC 2 cut(s) 88, 478
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 4 cut(s) 26, 209, 236, 280
Lsp1109I GCAGC 2 cut(s) 440, 545
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 336, 485
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 3 cut(s) 249, 409, 644
MalI GATC 2 cut(s) 90, 480
MboI GATC 2 cut(s) 88, 478
MboII GAAGA 6 cut(s) 142, 200, 362, 404, 407, 664
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 478
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 7 cut(s) 228, 380, 418, 495, 524, 605, 655
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 3 cut(s) 111, 257, 406
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 4 cut(s) 315, 465, 556, 608
Mox20I TGGCCA 1 cut(s) 509
MscI TGGCCA 1 cut(s) 509
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 258, 635
Msp20I TGGCCA 1 cut(s) 509
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 88, 478
NlaIII CATG 3 cut(s) 81, 428, 575
NlaIV GGNNCC 2 cut(s) 204, 480
NmuCI GTSAC 2 cut(s) 249, 409
NspI RCATGY 1 cut(s) 428
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 2 cut(s) 430, 535
PleI GAGTC 3 cut(s) 111, 256, 406
PpsI GAGTC 3 cut(s) 111, 256, 406
Psp6I CCWGG 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 204, 480
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 2 cut(s) 570, 627
RsaNI GTAC 2 cut(s) 569, 626
RseI CAYNNNNRTG 2 cut(s) 258, 635
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 429, 534
Sau3AI GATC 2 cut(s) 88, 478
SchI GAGTC 3 cut(s) 111, 257, 406
ScrFI CCNGG 1 cut(s) 224
SetI ASST 7 cut(s) 201, 225, 334, 437, 538, 600, 625
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 258, 635
SmlI CTYRAG 2 cut(s) 119, 537
SmoI CTYRAG 2 cut(s) 119, 537
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 7 cut(s) 228, 380, 418, 495, 524, 605, 655
SspMI CTAG 2 cut(s) 336, 485
StyD4I CCNGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 437
TaqI TCGA 1 cut(s) 153
TasI AATT 7 cut(s) 228, 380, 418, 495, 524, 605, 655
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 249, 409
TseI GCWGC 2 cut(s) 428, 533
Tsp45I GTSAC 2 cut(s) 249, 409
TspDTI ATGAA 3 cut(s) 201, 414, 588
TspRI CASTG 1 cut(s) 217
XapI RAATTY 4 cut(s) 228, 380, 524, 655
XceI RCATGY 1 cut(s) 428
XspI CTAG 2 cut(s) 336, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.