RchiOBHm_Chr2g0139691
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000244
Physical Location & Seq
Forward (+)
57207235 .. 57210603
3369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51020

Sequence Viewer

Length: 702 bp
ATGCATTTGACTGGTCTGTCTTCCAACGCTTTGTCTCATGTGCATTGTAGTTTAGCTGCAATTTATACTGTGTGGTATATATTGTCGTTATTGAATGCAAGTATGAGAAGACCTGAAAAACGGCGGTTGTCTCTAGCCCAAATTACTTCTCGATCACAATCTCAGATGAAAGGTAAGTCAGGGCCACATATCTCATGGAACAAAGAAATGGATGCTGCATTGGCTGAAGCGTTGATTGACCAAATGAAGCAAGGTAATAAGGTTGGTGGACAGTGGACAAGACATGCCATTCCAGCAGTTGTGCATGAGTTAAATATGACTTTAGATCTTGATTTGACAAAAGACAATGTGAAGAATAGACTTAAGGCTTGGAAGAGACATTATGCCATTATTTCTGATATCAAGAATCAAAGTCAGCTTATGTGGGGTGAAGGTAGGAAGATGGTTCTTATCACATCAGAAAATCTGGAAGCTTGGAATGATTATGTTGAGTCACATCCTCTTGCACGTGGTTATCAAAACAAATTCATCGATAATTGGGATGACATTGCATTGCTATGTGGGAAGGATCTTAAGGTGCAGAGAATATTGAAGATGTTGAAGGAGAAATGGGAGTTGAAAAGGAAAATGGAGTCAATTTCATCTCTAATTCCCGTAGTCTTACACATCCTTCAGCTTCAACTTTGGAATCACGTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

233

Amino Acids

26.89

Weight (kDa)

9.62

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 65 - 162 8.8e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AciI CCGC 1 cut(s) 124
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 2 cut(s) 246, 656
AcvI CACGTG 1 cut(s) 509
AflII CTTAAG 2 cut(s) 362, 572
AgsI TTSAA 5 cut(s) 94, 592, 601, 619, 680
AjiI CACGTC 1 cut(s) 694
AluBI AGCT 4 cut(s) 56, 418, 473, 676
AluI AGCT 4 cut(s) 56, 418, 473, 676
Alw26I GTCTC 3 cut(s) 39, 135, 370
AlwI GGATC 1 cut(s) 576
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 56, 215
ApoI RAATTY 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 440
BbrPI CACGTG 1 cut(s) 509
BbsI GAAGAC 2 cut(s) 12, 115
BbvI GCAGC 2 cut(s) 43, 202
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 39, 135, 370
BfaI CTAG 1 cut(s) 134
BfrI CTTAAG 2 cut(s) 362, 572
BglII AGATCT 1 cut(s) 325
BisI GCNGC 2 cut(s) 57, 216
BlsI GCNGC 2 cut(s) 58, 217
BmgBI CACGTC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 182
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 2 cut(s) 12, 115
Bsa29I ATCGAT 1 cut(s) 531
BsaAI YACGTR 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 546, 551
Bse8I GATNNNNATC 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 531
BseGI GGATG 4 cut(s) 217, 496, 547, 666
BseJI GATNNNNATC 1 cut(s) 157
BseMI GCAATG 2 cut(s) 546, 551
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 43, 202
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 531
BsmAI GTCTC 3 cut(s) 39, 135, 370
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 152, 325, 568
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 531
BspPI GGATC 1 cut(s) 576
BspTI CTTAAG 2 cut(s) 362, 572
BsrDI GCAATG 2 cut(s) 546, 551
BsrI ACTGG 1 cut(s) 16
BssMI GATC 3 cut(s) 152, 325, 568
Bst4CI ACNGT 2 cut(s) 70, 273
Bst6I CTCTTC 1 cut(s) 368
BstAFI CTTAAG 2 cut(s) 362, 572
BstBAI YACGTR 1 cut(s) 509
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 4 cut(s) 217, 496, 547, 666
BstKTI GATC 3 cut(s) 155, 328, 571
BstMAI GTCTC 3 cut(s) 39, 135, 370
BstMBI GATC 3 cut(s) 152, 325, 568
BstMWI GCNNNNNNNGC 2 cut(s) 221, 293
BstNSI RCATGY 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 43, 202
BstV2I GAAGAC 2 cut(s) 12, 115
BstX2I RGATCY 2 cut(s) 325, 568
BstYI RGATCY 2 cut(s) 325, 568
Bsu15I ATCGAT 1 cut(s) 531
BsuRI GGCC 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 531
BtrI CACGTC 1 cut(s) 694
BtsCI GGATG 4 cut(s) 217, 496, 547, 666
BtsIMutI CAGTG 2 cut(s) 278, 697
Cfr13I GGNCC 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 531
CviAII CATG 4 cut(s) 38, 195, 284, 305
CviJI RGCY 8 cut(s) 56, 137, 184, 224, 368, 418, 473, 676
CviKI_1 RGCY 8 cut(s) 56, 137, 184, 224, 368, 418, 473, 676
DdeI CTNAG 1 cut(s) 162
DpnI GATC 3 cut(s) 154, 327, 570
DpnII GATC 3 cut(s) 152, 325, 568
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco32I GATATC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 246, 656
Eco72I CACGTG 1 cut(s) 509
EcoRV GATATC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 41, 198, 287, 308
FatI CATG 4 cut(s) 37, 194, 283, 304
Fnu4HI GCNGC 2 cut(s) 57, 216
FokI GGATG 4 cut(s) 224, 483, 554, 653
Fsp4HI GCNGC 2 cut(s) 57, 216
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 57, 216
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 4 cut(s) 41, 198, 287, 308
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 4 cut(s) 406, 491, 632, 688
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 3 cut(s) 269, 276, 697
Hpy188I TCNGA 3 cut(s) 165, 397, 460
Hpy188III TCNNGA 4 cut(s) 150, 329, 403, 467
Hpy8I GTNNAC 3 cut(s) 269, 276, 697
HpyAV CCTTC 4 cut(s) 425, 559, 595, 680
HpyCH4III ACNGT 2 cut(s) 70, 273
HpyCH4IV ACGT 2 cut(s) 508, 693
HpyCH4V TGCA 9 cut(s) 4, 43, 59, 98, 218, 304, 506, 551, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 293
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 508, 693
Hsp92II CATG 4 cut(s) 41, 198, 287, 308
Kzo9I GATC 3 cut(s) 152, 325, 568
LpnPI CCDG 4 cut(s) 126, 165, 306, 452
Lsp1109I GCAGC 2 cut(s) 43, 202
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 508, 693
MaeIII GTNAC 1 cut(s) 492
MalI GATC 3 cut(s) 154, 327, 570
MboI GATC 3 cut(s) 152, 325, 568
MboII GAAGA 6 cut(s) 12, 120, 364, 385, 451, 604
MflI RGATCY 2 cut(s) 325, 568
MluCI AATT 6 cut(s) 60, 141, 524, 535, 636, 648
MlyI GAGTC 2 cut(s) 500, 641
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 311, 363, 573
MslI CAYNNNNRTG 1 cut(s) 556
MspCI CTTAAG 2 cut(s) 362, 572
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 221, 293
NdeII GATC 3 cut(s) 152, 325, 568
NlaIII CATG 4 cut(s) 41, 198, 287, 308
NmuCI GTSAC 1 cut(s) 492
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 287
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 406, 688
PkrI GCNGC 2 cut(s) 58, 217
PleI GAGTC 2 cut(s) 499, 640
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
PpsI GAGTC 2 cut(s) 499, 640
Ppu21I YACGTR 1 cut(s) 509
PspCI CACGTG 1 cut(s) 509
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 2 cut(s) 325, 568
RseI CAYNNNNRTG 1 cut(s) 556
SaqAI TTAA 3 cut(s) 311, 363, 573
SatI GCNGC 2 cut(s) 57, 216
Sau3AI GATC 3 cut(s) 152, 325, 568
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 2 cut(s) 500, 641
SfaNI GCATC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 362, 572
SmoI CTYRAG 2 cut(s) 362, 572
Sse9I AATT 6 cut(s) 60, 141, 524, 535, 636, 648
SsiI CCGC 1 cut(s) 124
SspI AATATT 1 cut(s) 588
SspMI CTAG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 70, 273
TaiI ACGT 2 cut(s) 511, 696
TaqI TCGA 2 cut(s) 151, 531
TasI AATT 6 cut(s) 60, 141, 524, 535, 636, 648
TfiI GAWTC 2 cut(s) 406, 688
Tru1I TTAA 3 cut(s) 311, 363, 573
Tru9I TTAA 3 cut(s) 311, 363, 573
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 2 cut(s) 56, 215
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 4 cut(s) 182, 260, 517, 630
TspRI CASTG 1 cut(s) 278
Vha464I CTTAAG 2 cut(s) 362, 572
XapI RAATTY 1 cut(s) 524
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.