Rh1AG410300
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000244
Physical Location & Seq
Reverse (-)
64200091 .. 64201123
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG410300.1

Sequence Viewer

Length: 945 bp
ATGAGTAGACTTGGAGGAAACAAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAGAGGAAAGGCTGAAGGCAAGAACTATTTGCAGTGGAATTTAGATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGAAATTTTATCTGCACAGTTTGATATTCAAATATCTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTACGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCATTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAGAACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAATAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCTGTGGATAGAATGGCGTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATCATGGCAATAACAGATCTTTCTAGAGAAGAACAAATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAGTTTCTCATGTTGAAAGAAGTCCCAGTGGAAATGAAAAAAGATATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

314

Amino Acids

35.32

Weight (kDa)

5.29

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 33 - 128 6.3e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccI GTMKAC 1 cut(s) 7
AclWI GGATC 1 cut(s) 943
AcsI RAATTY 2 cut(s) 103, 210
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 2 cut(s) 663, 706
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 236, 737, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 6 cut(s) 185, 191, 203, 327, 404, 411
AluI AGCT 6 cut(s) 185, 191, 203, 327, 404, 411
Alw26I GTCTC 2 cut(s) 396, 655
AlwI GGATC 1 cut(s) 943
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 103, 210
Asp700I GAANNNNTTC 3 cut(s) 281, 582, 744
AspLEI GCGC 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 572, 597
AsuII TTCGAA 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 696, 729
BbvI GCAGC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 396, 655
BfaI CTAG 2 cut(s) 657, 816
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 808
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 884
BmsI GCATC 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 884
BpmI CTGGAG 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 725
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 2 cut(s) 481, 890
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 2 cut(s) 501, 638
BseNI ACTGG 2 cut(s) 481, 890
BseRI GAGGAG 2 cut(s) 513, 657
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 396, 655
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 501
Bsp143I GATC 2 cut(s) 808, 935
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 502, 637
BspHI TCATGA 1 cut(s) 394
BspPI GGATC 1 cut(s) 943
BspT104I TTCGAA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 481, 890
BssMI GATC 2 cut(s) 808, 935
BssNI GRCGYC 1 cut(s) 725
Bst4CI ACNGT 4 cut(s) 225, 263, 368, 867
Bst6I CTCTTC 2 cut(s) 658, 673
BstACI GRCGYC 1 cut(s) 725
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 120, 838
BstDEI CTNAG 2 cut(s) 510, 624
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 2 cut(s) 811, 938
BstMAI GTCTC 2 cut(s) 396, 655
BstMBI GATC 2 cut(s) 808, 935
BstNSI RCATGY 1 cut(s) 840
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 808, 935
BstYI RGATCY 2 cut(s) 808, 935
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 5 cut(s) 104, 373, 474, 507, 897
Cac8I GCNNGC 2 cut(s) 120, 838
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 842
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 714
Csp6I GTAC 2 cut(s) 662, 705
CviAII CATG 6 cut(s) 273, 395, 545, 796, 837, 874
CviQI GTAC 2 cut(s) 662, 705
DdeI CTNAG 2 cut(s) 510, 624
DpnI GATC 2 cut(s) 810, 937
DpnII GATC 2 cut(s) 808, 935
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 658, 673
EarI CTCTTC 2 cut(s) 658, 673
Eco32I GATATC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 304
FaeI CATG 6 cut(s) 276, 398, 548, 799, 840, 877
FaqI GGGAC 1 cut(s) 872
FatI CATG 6 cut(s) 272, 394, 544, 795, 836, 873
FauNDI CATATG 1 cut(s) 931
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 657, 816
GlaI GCGC 1 cut(s) 841
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 159
HgaI GACGC 1 cut(s) 714
HhaI GCGC 1 cut(s) 842
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 6 cut(s) 276, 398, 548, 799, 840, 877
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 3 cut(s) 332, 426, 520
HphI GGTGA 2 cut(s) 572, 597
Hpy166II GTNNAC 2 cut(s) 8, 662
Hpy188I TCNGA 2 cut(s) 577, 627
Hpy188III TCNNGA 4 cut(s) 140, 307, 395, 816
Hpy8I GTNNAC 2 cut(s) 8, 662
HpyAV CCTTC 3 cut(s) 50, 74, 551
HpyCH4III ACNGT 4 cut(s) 225, 263, 368, 867
HpyCH4V TGCA 3 cut(s) 97, 221, 941
HpyF3I CTNAG 2 cut(s) 510, 624
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 6 cut(s) 276, 398, 548, 799, 840, 877
HspAI GCGC 1 cut(s) 840
Kzo9I GATC 2 cut(s) 808, 935
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 140, 313, 462, 480, 540, 903
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 581
MaeI CTAG 2 cut(s) 657, 816
MaeIII GTNAC 1 cut(s) 682
MalI GATC 2 cut(s) 810, 937
MboI GATC 2 cut(s) 808, 935
MboII GAAGA 7 cut(s) 389, 548, 590, 645, 690, 749, 833
MflI RGATCY 2 cut(s) 808, 935
MluCI AATT 4 cut(s) 103, 210, 291, 433
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 1 cut(s) 158
MroXI GAANNNNTTC 3 cut(s) 281, 582, 744
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 203
NdeI CATATG 1 cut(s) 931
NdeII GATC 2 cut(s) 808, 935
NlaIII CATG 6 cut(s) 276, 398, 548, 799, 840, 877
NspI RCATGY 1 cut(s) 840
NspV TTCGAA 1 cut(s) 501
PaeI GCATGC 1 cut(s) 840
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 3 cut(s) 281, 582, 744
PfeI GAWTC 2 cut(s) 332, 426
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 2 cut(s) 808, 935
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 663, 706
RsaNI GTAC 2 cut(s) 662, 705
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 808, 935
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 514
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 840
Sse9I AATT 4 cut(s) 103, 210, 291, 433
SspMI CTAG 2 cut(s) 657, 816
TaaI ACNGT 4 cut(s) 225, 263, 368, 867
TaqI TCGA 2 cut(s) 501, 549
TasI AATT 4 cut(s) 103, 210, 291, 433
TfiI GAWTC 2 cut(s) 332, 426
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 5 cut(s) 104, 373, 481, 514, 897
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 7 cut(s) 69, 375, 414, 549, 654, 914, 918
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 5 cut(s) 104, 373, 481, 514, 897
XapI RAATTY 2 cut(s) 103, 210
XbaI TCTAGA 1 cut(s) 815
XceI RCATGY 1 cut(s) 840
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 3 cut(s) 281, 582, 744
XspI CTAG 2 cut(s) 657, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.