Rh7AG131700
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000244
Physical Location & Seq
Reverse (-)
10546082 .. 10547829
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG131700.1

Sequence Viewer

Length: 804 bp
ATGCCCAATGATCAACTATTGGATGATGTGGACCGAGACTTAGAAAATACACCTGAGGTGGAAGATGAAGATGTGGATGATGAGAACATTAGAAATATCAAGCTATTAGAAGAGCTCAAGATTCTTGAATTTTTATTATGTATGAAGAGTAAGGGCAAGGAAAAATCTCGAAGTCTTGTACCTGTGTCCAATTTTAACTTAAAGGGCAAGGGCAAAGGAACAGGCACATCTAGGGCATATCTCTCTTGGAACAAAGAAATGGATGATGTACTTGCTAAAGTACTTTATGATCAAATGAACGCAGGACACAAGGCTGATGGAGACTGGAAACCTCAAGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACCGACATCAAAAGTCAAAGCGGGCTTGTTTGGGATGAAGAGAAAAAGATGGTTCCAATCACTGCAGAAAACCTGGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAATTGGGATGATATCGCTATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCACACATGCAGCAACTTCGACTTGTGAATCACATCCTCCAAGTAAGAAAAAGAAAAAGGATCCACTAGCACAAGATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

267

Amino Acids

30.24

Weight (kDa)

4.88

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 82 - 179 3.9e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 465
AclWI GGATC 2 cut(s) 776, 789
AcsI RAATTY 3 cut(s) 128, 522, 674
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 3 cut(s) 180, 270, 282
AgsI TTSAA 3 cut(s) 128, 364, 680
AjnI CCWGG 1 cut(s) 516
AluBI AGCT 4 cut(s) 103, 115, 338, 626
AluI AGCT 4 cut(s) 103, 115, 338, 626
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 4 cut(s) 30, 315, 389, 421
AlwI GGATC 2 cut(s) 776, 789
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 3 cut(s) 128, 522, 674
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 436, 644
AvaII GGWCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 54
BamHI GGATCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 743
BccI CCATC 2 cut(s) 311, 487
BcgI CGANNNNNNTGC 2 cut(s) 720, 754
BciT130I CCWGG 1 cut(s) 518
BclI TGATCA 2 cut(s) 10, 289
BcoDI GTCTC 4 cut(s) 30, 315, 389, 421
BfaI CTAG 2 cut(s) 231, 788
BfmI CTRYAG 1 cut(s) 507
BisI GCNGC 1 cut(s) 732
BlsI GCNGC 1 cut(s) 733
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 498, 783
BmrFI CCNGG 1 cut(s) 518
BmsI GCATC 1 cut(s) 646
BpuEI CTTGAG 3 cut(s) 101, 318, 398
BsaI GGTCTC 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 329, 634
Bse21I CCTNAGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 518
BseGI GGATG 7 cut(s) 28, 82, 268, 484, 547, 598, 754
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 329, 634
BseXI GCAGC 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 117
BsmAI GTCTC 4 cut(s) 30, 315, 389, 421
BsmI GAATGC 2 cut(s) 370, 535
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 10, 289, 781
BspACI CCGC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 498, 783
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 776, 789
BspQI GCTCTTC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 389
BsrI ACTGG 2 cut(s) 329, 634
BssMI GATC 3 cut(s) 10, 289, 781
Bst2UI CCWGG 1 cut(s) 518
Bst6I CTCTTC 4 cut(s) 105, 140, 419, 477
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 2 cut(s) 40, 54
BstF5I GGATG 7 cut(s) 28, 82, 268, 484, 547, 598, 754
BstKTI GATC 3 cut(s) 13, 292, 784
BstMAI GTCTC 4 cut(s) 30, 315, 389, 421
BstMBI GATC 3 cut(s) 10, 289, 781
BstMWI GCNNNNNNNGC 2 cut(s) 344, 728
BstNI CCWGG 1 cut(s) 518
BstNSI RCATGY 2 cut(s) 722, 731
BstSCI CCNGG 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 743
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
Bsu36I CCTNAGG 1 cut(s) 54
BtsCI GGATG 7 cut(s) 28, 82, 268, 484, 547, 598, 754
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 179, 269, 281
CviAII CATG 3 cut(s) 372, 719, 728
CviJI RGCY 7 cut(s) 103, 115, 314, 338, 419, 469, 626
CviKI_1 RGCY 7 cut(s) 103, 115, 314, 338, 419, 469, 626
CviQI GTAC 3 cut(s) 179, 269, 281
DdeI CTNAG 2 cut(s) 40, 54
DpnI GATC 3 cut(s) 12, 291, 783
DpnII GATC 3 cut(s) 10, 289, 781
Eam1104I CTCTTC 4 cut(s) 105, 140, 419, 477
EarI CTCTTC 4 cut(s) 105, 140, 419, 477
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 2 cut(s) 566, 598
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 681
Eco81I CCTNAGG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 516
EcoRV GATATC 2 cut(s) 566, 598
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 3 cut(s) 375, 722, 731
FatI CATG 3 cut(s) 371, 718, 727
FauI CCCGC 1 cut(s) 458
FbaI TGATCA 2 cut(s) 10, 289
Fnu4HI GCNGC 1 cut(s) 732
FokI GGATG 7 cut(s) 35, 89, 275, 491, 534, 605, 741
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 732
FspBI CTAG 2 cut(s) 231, 788
GluI GCNGC 1 cut(s) 732
Hin1II CATG 3 cut(s) 375, 722, 731
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 5 cut(s) 121, 411, 542, 706, 749
HphI GGTGA 2 cut(s) 436, 644
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 4 cut(s) 118, 125, 168, 403
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 629
HpyCH4V TGCA 2 cut(s) 509, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 728
HpyF3I CTNAG 2 cut(s) 40, 54
Hsp92II CATG 3 cut(s) 375, 722, 731
Ksp22I TGATCA 2 cut(s) 10, 289
Kzo9I GATC 3 cut(s) 10, 289, 781
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 8 cut(s) 66, 195, 207, 288, 310, 503, 530, 615
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 1 cut(s) 646
MaeI CTAG 2 cut(s) 231, 788
MaeIII GTNAC 2 cut(s) 543, 703
MalI GATC 3 cut(s) 12, 291, 783
MboI GATC 3 cut(s) 10, 289, 781
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 6 cut(s) 128, 190, 522, 586, 674, 712
MlyI GAGTC 3 cut(s) 405, 551, 700
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 4 cut(s) 49, 342, 609, 768
MseI TTAA 3 cut(s) 195, 200, 396
MslI CAYNNNNRTG 1 cut(s) 552
MspR9I CCNGG 1 cut(s) 518
Mva1269I GAATGC 2 cut(s) 370, 535
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 2 cut(s) 344, 728
NdeII GATC 3 cut(s) 10, 289, 781
NlaIII CATG 3 cut(s) 375, 722, 731
NlaIV GGNNCC 2 cut(s) 498, 783
NmuCI GTSAC 2 cut(s) 543, 703
NspI RCATGY 2 cut(s) 722, 731
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 370, 535
PfeI GAWTC 2 cut(s) 121, 749
PkrI GCNGC 1 cut(s) 733
PleI GAGTC 3 cut(s) 405, 550, 700
PpsI GAGTC 3 cut(s) 405, 550, 700
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 498, 783
PspPI GGNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 781
RsaI GTAC 3 cut(s) 180, 270, 282
RsaNI GTAC 3 cut(s) 179, 269, 281
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 195, 200, 396
SatI GCNGC 1 cut(s) 732
Sau3AI GATC 3 cut(s) 10, 289, 781
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 3 cut(s) 405, 551, 700
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 1 cut(s) 117
SetI ASST 9 cut(s) 55, 60, 105, 117, 184, 334, 340, 519, 628
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 3 cut(s) 116, 333, 413
SmoI CTYRAG 3 cut(s) 116, 333, 413
Sse9I AATT 6 cut(s) 128, 190, 522, 586, 674, 712
SsiI CCGC 1 cut(s) 465
SspMI CTAG 2 cut(s) 231, 788
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 516
TaqI TCGA 2 cut(s) 169, 740
TaqII GACCGA 1 cut(s) 48
TasI AATT 6 cut(s) 128, 190, 522, 586, 674, 712
TatI WGTACW 2 cut(s) 268, 280
TfiI GAWTC 2 cut(s) 121, 749
Tru1I TTAA 3 cut(s) 195, 200, 396
Tru9I TTAA 3 cut(s) 195, 200, 396
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 2 cut(s) 543, 703
TseI GCWGC 1 cut(s) 731
Tsp45I GTSAC 2 cut(s) 543, 703
TspDTI ATGAA 5 cut(s) 81, 158, 311, 495, 708
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 3 cut(s) 128, 522, 674
XceI RCATGY 2 cut(s) 722, 731
XspI CTAG 2 cut(s) 231, 788
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.