AT4G02550
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000244
Physical Location & Seq
Reverse (-)
1120365 .. 1122223
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02550.2

Sequence Viewer

Length: 924 bp
ATGGATCAATATGGGATTCCAGTAGAGAGAAAAGAGATGAAGCATAAGGGGAGAAATGTTATATGGTCTGTTGGAATGGATAAGTGTTTGATTGAAGCTTTGGCTGTCCAGGCCAAAAACGGGAACAAAGTTGACAAATGTTTTAACGATAAGGCTTACACTGCTGCTTGTGTTGCGGTTAATACTCGTTTCAATCTTAACTTGACTAGCCAGAAAGCCATCAATCGCCTCAAGACGATCAAGAAAAGGTACAGAGTTATGAGAGACATACTTAGCCGGGATGGATTCTGGTGGAACTCGAGCACAAAAATGATCGATTGCGAAAGTGATGAGCTCTGGAGAAGATATATTGCTGTAAACCCAGACGCAAAAGCATTTAGGGGAAAGCAAATTGAGATGTACGAAGAACTTAGAACAGTATGCGGTGACTATCAAACTCCAGGTAAATATAACAAAGTGAAGAAGGAAAGCAGTCATCATCTTAATGACGTAAAACAATTTGAAGAAGACTCTGTTTCCTTCCCTTTAGGAAGTTCTGAAGAACATAGCGATACAGATGGAACAGAGTCATACGCAGGAGCAAGTGAGTATATGCATGAAGAGTCTCAAGATCTTCCTCCTCCTCGAGATCCTTTAAGACGACCTTCTAAACGTTCTCGAAACTCGGATCCTTGTCAAGAAGCAATGTTAGTGGTTGCTTCTAGCATTCGCCGCCTAGCTGATGCAGTGGTTCAAAGCAAAACTTTGATTAACACAGAGGAATTGTTGAAAGCAGTGATGGAGATTGATGAATTGGAAGAAGCAAAACAGATGTATGCGTTTGAGTATCTGAATGGTGATCCAGTCAAAGCTAGAGCTTTCATGGCTTATAATAATAGGATGAGGAAGATGTTTTTGTTTCGACAGTTTTGGTGGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

307

Amino Acids

35.76

Weight (kDa)

8.72

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 22 - 116 2.8e-24 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 870
AciI CCGC 3 cut(s) 176, 423, 712
AclI AACGTT 1 cut(s) 652
AclWI GGATC 5 cut(s) 12, 623, 662, 675, 833
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 2 cut(s) 251, 401
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 5 cut(s) 95, 193, 503, 734, 769
AjnI CCWGG 2 cut(s) 108, 439
AluBI AGCT 5 cut(s) 98, 334, 719, 851, 857
AluI AGCT 5 cut(s) 98, 334, 719, 851, 857
Alw21I GWGCWC 2 cut(s) 305, 336
Alw26I GTCTC 2 cut(s) 258, 609
AlwI GGATC 5 cut(s) 12, 623, 662, 675, 833
Ama87I CYCGRG 2 cut(s) 298, 624
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 437, 848
AvaI CYCGRG 2 cut(s) 298, 624
BamHI GGATCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 305, 336
BbvI GCAGC 1 cut(s) 151
BccI CCATC 4 cut(s) 227, 275, 551, 772
BciT130I CCWGG 2 cut(s) 110, 441
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 258, 609
BfaI CTAG 4 cut(s) 207, 702, 716, 852
BglII AGATCT 1 cut(s) 610
BisI GCNGC 2 cut(s) 165, 712
BlsI GCNGC 2 cut(s) 166, 713
Bme1390I CCNGG 3 cut(s) 110, 278, 441
BmeT110I CYCGRG 2 cut(s) 298, 624
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 3 cut(s) 110, 278, 441
BmsI GCATC 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 513
BpmI CTGGAG 2 cut(s) 358, 423
BpuEI CTTGAG 2 cut(s) 215, 591
BpuMI CCSGG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 20, 842
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 110, 441
BseCI ATCGAT 1 cut(s) 315
BseGI GGATG 2 cut(s) 286, 885
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 690
BseNI ACTGG 2 cut(s) 20, 842
BseRI GAGGAG 2 cut(s) 609, 612
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 305, 336
BsiHKCI CYCGRG 2 cut(s) 298, 624
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 258, 609
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 2 cut(s) 298, 624
Bsp1286I GDGCHC 2 cut(s) 305, 336
Bsp143I GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
BspACI CCGC 3 cut(s) 176, 423, 712
BspANI GGCC 1 cut(s) 113
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 669
BspPI GGATC 5 cut(s) 12, 623, 662, 675, 833
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 2 cut(s) 20, 842
BssMI GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
Bst2UI CCWGG 2 cut(s) 110, 441
Bst4CI ACNGT 2 cut(s) 418, 906
Bst6I CTCTTC 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 272, 410
BstF5I GGATG 2 cut(s) 286, 885
BstKTI GATC 7 cut(s) 7, 240, 315, 613, 631, 670, 841
BstMAI GTCTC 2 cut(s) 258, 609
BstMBI GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
BstMWI GCNNNNNNNGC 5 cut(s) 110, 161, 173, 711, 863
BstNI CCWGG 2 cut(s) 110, 441
BstSCI CCNGG 3 cut(s) 108, 276, 439
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 3 cut(s) 610, 628, 667
BstYI RGATCY 3 cut(s) 610, 628, 667
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 2 cut(s) 286, 885
BtsI GCAGTG 3 cut(s) 159, 732, 780
BtsIMutI CAGTG 3 cut(s) 159, 732, 780
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 250, 400
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 2 cut(s) 596, 862
CviQI GTAC 2 cut(s) 250, 400
DdeI CTNAG 2 cut(s) 272, 410
DpnI GATC 7 cut(s) 6, 239, 314, 612, 630, 669, 840
DpnII GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 2 cut(s) 298, 624
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 108, 439
EcoT22I ATGCAT 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 2 cut(s) 599, 865
FalI AAGNNNNNCTT 4 cut(s) 628, 660, 727, 759
FatI CATG 2 cut(s) 595, 861
Fnu4HI GCNGC 2 cut(s) 165, 712
FokI GGATG 2 cut(s) 293, 892
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 165, 712
FspBI CTAG 4 cut(s) 207, 702, 716, 852
GluI GCNGC 2 cut(s) 165, 712
GsuI CTGGAG 2 cut(s) 358, 423
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 599, 865
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 5 cut(s) 16, 285, 509, 566, 602
HpaII CCGG 1 cut(s) 277
HphI GGTGA 2 cut(s) 437, 848
Hpy166II GTNNAC 2 cut(s) 133, 358
Hpy188I TCNGA 3 cut(s) 538, 667, 831
Hpy188III TCNNGA 7 cut(s) 232, 241, 337, 608, 626, 657, 677
Hpy8I GTNNAC 2 cut(s) 133, 358
HpyAV CCTTC 3 cut(s) 457, 529, 654
HpyCH4III ACNGT 2 cut(s) 418, 906
HpyCH4IV ACGT 2 cut(s) 489, 652
HpyCH4V TGCA 2 cut(s) 595, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 161, 173, 711, 863
HpyF3I CTNAG 2 cut(s) 272, 410
HpySE526I ACGT 2 cut(s) 489, 652
Hsp92II CATG 2 cut(s) 599, 865
Kzo9I GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 712
MaeI CTAG 4 cut(s) 207, 702, 716, 852
MaeII ACGT 2 cut(s) 489, 652
MaeIII GTNAC 1 cut(s) 425
MalI GATC 7 cut(s) 6, 239, 314, 612, 630, 669, 840
MboI GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
MflI RGATCY 3 cut(s) 610, 628, 667
MhlI GDGCHC 2 cut(s) 305, 336
MluCI AATT 4 cut(s) 390, 497, 761, 791
MlyI GAGTC 3 cut(s) 503, 575, 611
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 6 cut(s) 239, 627, 630, 633, 751, 876
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 6 cut(s) 144, 180, 198, 483, 635, 750
MslI CAYNNNNRTG 2 cut(s) 308, 483
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 3 cut(s) 110, 278, 441
Mva1269I GAATGC 1 cut(s) 705
MvaI CCWGG 2 cut(s) 110, 441
MwoI GCNNNNNNNGC 5 cut(s) 110, 161, 173, 711, 863
NciI CCSGG 1 cut(s) 278
NdeII GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
NlaIII CATG 2 cut(s) 599, 865
NlaIV GGNNCC 1 cut(s) 669
NmuCI GTSAC 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 597
PaeR7I CTCGAG 2 cut(s) 298, 624
PctI GAATGC 1 cut(s) 705
PfeI GAWTC 2 cut(s) 16, 285
PkrI GCNGC 2 cut(s) 166, 713
PleI GAGTC 3 cut(s) 503, 574, 610
PpsI GAGTC 3 cut(s) 503, 574, 610
PsiI TTATAA 1 cut(s) 870
Psp124BI GAGCTC 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 108, 439
PspGI CCWGG 2 cut(s) 108, 439
PspN4I GGNNCC 1 cut(s) 669
PspXI VCTCGAGB 1 cut(s) 298
PsuI RGATCY 3 cut(s) 610, 628, 667
RsaI GTAC 2 cut(s) 251, 401
RsaNI GTAC 2 cut(s) 250, 400
RseI CAYNNNNRTG 2 cut(s) 308, 483
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 6 cut(s) 144, 180, 198, 483, 635, 750
SatI GCNGC 2 cut(s) 165, 712
Sau3AI GATC 7 cut(s) 4, 237, 312, 610, 628, 667, 838
SchI GAGTC 3 cut(s) 503, 575, 611
ScrFI CCNGG 3 cut(s) 110, 278, 441
SduI GDGCHC 2 cut(s) 305, 336
SfaNI GCATC 1 cut(s) 712
Sfr274I CTCGAG 2 cut(s) 298, 624
SlaI CTCGAG 2 cut(s) 298, 624
SmiMI CAYNNNNRTG 2 cut(s) 308, 483
SmlI CTYRAG 4 cut(s) 230, 298, 606, 624
SmoI CTYRAG 4 cut(s) 230, 298, 606, 624
Sse9I AATT 4 cut(s) 390, 497, 761, 791
SsiI CCGC 3 cut(s) 176, 423, 712
SspMI CTAG 4 cut(s) 207, 702, 716, 852
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 108, 276, 439
TaaI ACNGT 2 cut(s) 418, 906
TaiI ACGT 2 cut(s) 492, 655
TaqI TCGA 5 cut(s) 299, 315, 625, 658, 901
TasI AATT 4 cut(s) 390, 497, 761, 791
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 2 cut(s) 16, 285
Tru1I TTAA 6 cut(s) 144, 180, 198, 483, 635, 750
Tru9I TTAA 6 cut(s) 144, 180, 198, 483, 635, 750
TscAI CASTG 3 cut(s) 166, 732, 780
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 53, 612, 804, 850
TspRI CASTG 3 cut(s) 166, 732, 780
XhoI CTCGAG 2 cut(s) 298, 624
XspI CTAG 4 cut(s) 207, 702, 716, 852
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.