FvH4_2g13781
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000244
Physical Location & Seq
Reverse (-)
12011031 .. 12011740
710 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13781.t1

Sequence Viewer

Length: 624 bp
ATGTCAAGAGTGAAGGGCAAAGGAAAGACTGAAGGCAAGAACTATTTGCAGTGGAATTTAGCTATGGAGCGTGTTTTGGCTGAAGCACTTCGTGAGGAGCGCAGTTTGGGATATAAAGGAGATAACGGTTGGAAAGGTGTAGTTTATACTACAGCTGCTAATATTTTATCTGCACAATTTGCAATTCAAATAACTGCAGATAATATAAAAAATCGGGTCAAGTTGTGGAAAAAGTATTATGTAGTCGTGAGTGATATCTTGAGCCAAAGTGGATTTAGTTGGGATTCCTCGACACAGATGATAAACGTTGATGAAAATAGTGTATGGGAAGAATATGTAAATTCCCATAATGATGTTGTAAGCTTTCGATATAAGAGAATCCCAAATTGGGATGATATAGTTGATCTGTGTGGCAAAGATAGAGCTACTGGAGAGGGAGCTAAAACTGGTTTTGAAGCCACTGAAGTAATGACTCCTCTTGCTAGTGAGCATAATCATGTCGATTTGGAAAATGATGACCAAGTTTTTGGAGATATTCACATTATTGAAGACAATTCACCCGACCAAGCAATTGCAAAGAAAAAGAGAAATGAAACAACACCTTCTTCTAACGTCCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

5.3

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 112 1.6e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 306
AcsI RAATTY 2 cut(s) 55, 340
AcuI CTGAAG 3 cut(s) 51, 102, 483
AdeI CACNNNGTG 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 3 cut(s) 188, 455, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 5 cut(s) 62, 155, 363, 425, 440
AluI AGCT 5 cut(s) 62, 155, 363, 425, 440
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 55, 340
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 142
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 2 cut(s) 150, 195
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 2 cut(s) 433, 451
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 388
BseNI ACTGG 2 cut(s) 433, 451
BseRI GAGGAG 2 cut(s) 110, 465
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 599
Bsp143I GATC 1 cut(s) 403
BspMAI CTGCAG 1 cut(s) 199
BsrI ACTGG 2 cut(s) 433, 451
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 179
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 2 cut(s) 150, 195
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 527
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 56, 459
CfoI GCGC 1 cut(s) 102
CviAII CATG 1 cut(s) 497
CviJI RGCY 8 cut(s) 62, 80, 155, 264, 363, 425, 440, 458
CviKI_1 RGCY 8 cut(s) 62, 80, 155, 264, 363, 425, 440, 458
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraIII CACNNNGTG 1 cut(s) 92
Eco32I GATATC 1 cut(s) 256
Eco57I CTGAAG 3 cut(s) 51, 102, 483
EcoRV GATATC 1 cut(s) 256
FaeI CATG 1 cut(s) 500
FaqI GGGAC 1 cut(s) 599
FatI CATG 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 450
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 500
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 3 cut(s) 284, 378, 472
HphI GGTGA 1 cut(s) 549
Hpy188III TCNNGA 4 cut(s) 6, 92, 247, 259
HpyAV CCTTC 3 cut(s) 7, 26, 612
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 306, 612
HpyCH4V TGCA 5 cut(s) 49, 173, 182, 197, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpySE526I ACGT 2 cut(s) 306, 612
Hsp92II CATG 1 cut(s) 500
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 3 cut(s) 67, 97, 437
LpnPI CCDG 2 cut(s) 414, 432
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 483
MaeII ACGT 2 cut(s) 306, 612
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 3 cut(s) 341, 560, 597
MfeI CAATTG 1 cut(s) 570
MluCI AATT 7 cut(s) 55, 176, 183, 340, 385, 553, 570
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 4 cut(s) 88, 298, 427, 486
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 622
MslI CAYNNNNRTG 2 cut(s) 351, 495
MspA1I CMGCKG 1 cut(s) 155
MunI CAATTG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 284, 378
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
Psp1406I AACGTT 1 cut(s) 306
PstI CTGCAG 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 155
RseI CAYNNNNRTG 2 cut(s) 351, 495
SaqAI TTAA 1 cut(s) 622
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 403
SchI GAGTC 1 cut(s) 466
SetI ASST 9 cut(s) 64, 139, 157, 309, 365, 427, 442, 604, 615
SfcI CTRYAG 2 cut(s) 150, 195
SmiMI CAYNNNNRTG 2 cut(s) 351, 495
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 7 cut(s) 55, 176, 183, 340, 385, 553, 570
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 483
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 309, 615
TaqI TCGA 3 cut(s) 290, 367, 501
TasI AATT 7 cut(s) 55, 176, 183, 340, 385, 553, 570
TfiI GAWTC 2 cut(s) 284, 378
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 2 cut(s) 56, 466
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 327, 606
TspRI CASTG 2 cut(s) 56, 466
XapI RAATTY 2 cut(s) 55, 340
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.