pycom02g23280
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000244
Physical Location & Seq
Reverse (-)
21386688 .. 21387418
731 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23280.1

Sequence Viewer

Length: 645 bp
ATGGGTTCAGGTGGAATCCCACTACAAAGATCGATCGAGTGTGACAATGAAGAACTTTGGAAGAGATACATTGCAGCACATCCTGATGCAAAAGGGTTTCGAGGAAAGCCGATAGAGATGTTTGATGAACTCAAAATTGTTTGTGGAAACTATCAAGTCCCTAGTCGCTGGGCTAAGATGAAGGATGGAGGCCATCCAAGTGAGATGAAGAATTTTGAAGATGATTCTGCCTCATTTCTTTCTCCAAGCTCAGATGACCTAAGTGAGACAGACGGAACTGAGTCATATAGTGGACCAGAAGAAGAATTTACCAAGTTTCCAGATGGTAGTCAAGACCCCCCTCTGGTCCAGCCACTTAGACAACTTCCAAAACGCCCTCGCAATTCAGAAGCCCTTCAGGATGCACTGATGACTGTGGCATCAAGCATTCGTTGCTTGGCTGATGCAATGGAGCAAAGCAAATACCCTATTGATGCCTCTCAACTACTACAGGCTGTGATGGAGATTGATGGTTTGGAAGAGGCTAAACAGATGTATGCATTTGAGTATTTGAATGCTGACCCTGTCAAAGCTCGAGCTTTCATGACATACGATGCTCGGATGAGAAAAATATACTTGTTTAGACAGTTCTGGTGGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

215

Amino Acids

24.47

Weight (kDa)

4.88

Isoelectric Point (pI)

67.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 211, 305
AcuI CTGAAG 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 218, 553
AluBI AGCT 3 cut(s) 249, 572, 578
AluI AGCT 3 cut(s) 249, 572, 578
Alw26I GTCTC 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 211, 305
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 293, 346
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 2 cut(s) 293, 346
BbvI GCAGC 1 cut(s) 86
BccI CCATC 5 cut(s) 179, 201, 317, 493, 503
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 488
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 293, 346
BmeT110I CYCGRG 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 293, 346
BmsI GCATC 6 cut(s) 76, 391, 428, 433, 463, 583
Bsa29I ATCGAT 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 2 cut(s) 69, 453
BseCI ATCGAT 1 cut(s) 32
BseGI GGATG 5 cut(s) 79, 190, 193, 406, 606
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 2 cut(s) 69, 453
BseMII CTCAG 2 cut(s) 264, 270
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 426, 559
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 573
Bsp143I GATC 2 cut(s) 29, 33
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 263, 271
BspDI ATCGAT 1 cut(s) 32
BspHI TCATGA 1 cut(s) 582
BsrDI GCAATG 2 cut(s) 69, 453
BssMI GATC 2 cut(s) 29, 33
Bst4CI ACNGT 2 cut(s) 415, 627
Bst6I CTCTTC 2 cut(s) 56, 513
BstAPI GCANNNNNTGC 1 cut(s) 432
BstDEI CTNAG 5 cut(s) 174, 250, 260, 279, 356
BstF5I GGATG 5 cut(s) 79, 190, 193, 406, 606
BstKTI GATC 2 cut(s) 32, 36
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 29, 33
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstSFI CTRYAG 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 32
BtsCI GGATG 5 cut(s) 79, 190, 193, 406, 606
BtsIMutI CAGTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 582
Cfr13I GGNCC 2 cut(s) 293, 346
ClaI ATCGAT 1 cut(s) 32
CviAII CATG 1 cut(s) 583
DdeI CTNAG 5 cut(s) 174, 250, 260, 279, 356
DpnI GATC 2 cut(s) 31, 35
DpnII GATC 2 cut(s) 29, 33
Eam1104I CTCTTC 2 cut(s) 56, 513
EarI CTCTTC 2 cut(s) 56, 513
Eco47I GGWCC 2 cut(s) 293, 346
Eco57I CTGAAG 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 541
FaeI CATG 1 cut(s) 586
FaiI YATR 6 cut(s) 286, 288, 537, 584, 589, 613
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 582
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 5 cut(s) 66, 180, 197, 413, 613
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 1 cut(s) 586
HinfI GANTC 3 cut(s) 15, 224, 281
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 3 cut(s) 253, 388, 600
Hpy188III TCNNGA 5 cut(s) 83, 320, 332, 398, 583
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 175, 404
HpyCH4III ACNGT 2 cut(s) 415, 627
HpyCH4V TGCA 5 cut(s) 74, 89, 404, 446, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
HpyF3I CTNAG 5 cut(s) 174, 250, 260, 279, 356
Hsp92II CATG 1 cut(s) 586
Kzo9I GATC 2 cut(s) 29, 33
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 6 cut(s) 76, 391, 428, 433, 463, 583
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 41
MalI GATC 2 cut(s) 31, 35
MboI GATC 2 cut(s) 29, 33
MboII GAAGA 7 cut(s) 62, 73, 220, 230, 311, 314, 530
MluCI AATT 4 cut(s) 135, 211, 305, 382
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 7 cut(s) 95, 182, 241, 351, 387, 487, 514
Mph1103I ATGCAT 1 cut(s) 541
MroXI GAANNNNTTC 1 cut(s) 393
MslI CAYNNNNRTG 2 cut(s) 84, 198
Mva1269I GAATGC 2 cut(s) 426, 559
MwoI GCNNNNNNNGC 1 cut(s) 432
NdeII GATC 2 cut(s) 29, 33
NlaIII CATG 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 541
PaeR7I CTCGAG 1 cut(s) 573
PagI TCATGA 1 cut(s) 582
PctI GAATGC 2 cut(s) 426, 559
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 15, 224
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 1 cut(s) 76
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 293, 346
PspXI VCTCGAGB 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 563
PvuI CGATCG 1 cut(s) 36
RseI CAYNNNNRTG 2 cut(s) 84, 198
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 29, 33
Sau96I GGNCC 2 cut(s) 293, 346
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 13, 251, 261, 574, 580
SfaNI GCATC 6 cut(s) 76, 391, 428, 433, 463, 583
SfcI CTRYAG 1 cut(s) 488
Sfr274I CTCGAG 1 cut(s) 573
SinI GGWCC 2 cut(s) 293, 346
SlaI CTCGAG 1 cut(s) 573
SmiMI CAYNNNNRTG 2 cut(s) 84, 198
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
Sse9I AATT 4 cut(s) 135, 211, 305, 382
SspMI CTAG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 415, 627
TaqI TCGA 4 cut(s) 32, 36, 100, 574
TasI AATT 4 cut(s) 135, 211, 305, 382
TfiI GAWTC 2 cut(s) 15, 224
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 5 cut(s) 63, 141, 194, 221, 571
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 411
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 293, 346
XapI RAATTY 2 cut(s) 211, 305
XhoI CTCGAG 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.