RchiOBHm_Chr5g0053961
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000244
Physical Location & Seq
Forward (+)
56298317 .. 56300219
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33119

Sequence Viewer

Length: 570 bp
ATGGTTCCAATCACTGCAGAAAACCTGGAAATTTGGAATGCTTATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAATTGGGATGATATCGCTATGCTATGTGGGAGGAATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCACACATGCAGCAACTTCGACTTGTGAATCACATCCTCCAAATAAGAAAAAGAAAAAGGATCCACTAGCACAAGCAATTGGTGATGTGGCCAACACCTTGAAAGAGTTTATGGCAGCTCAAGTCTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAACCTCAGCAAATTGCAAGTCTTCAAAGCTGTACGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTACTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAGAATGCTCATATGGCAATCTGAAGGGCAACCAAGAATTGAGGGTGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

189

Amino Acids

20.84

Weight (kDa)

4.76

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 284, 297
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 3 cut(s) 30, 182, 467
AcuI CTGAAG 3 cut(s) 189, 500, 558
AfaI GTAC 2 cut(s) 381, 438
AgsI TTSAA 3 cut(s) 188, 331, 430
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 3 cut(s) 134, 347, 434
AluI AGCT 3 cut(s) 134, 347, 434
Alw26I GTCTC 2 cut(s) 358, 489
AlwI GGATC 2 cut(s) 284, 297
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 239, 344
ApoI RAATTY 3 cut(s) 30, 182, 467
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AsuHPI GGTGA 2 cut(s) 152, 323
BalI TGGCCA 1 cut(s) 320
BamHI GGATCC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 2 cut(s) 251, 356
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 358, 489
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 240, 345
BlsI GCNGC 2 cut(s) 241, 346
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 6, 291
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 154, 484
BpiI GAAGAC 1 cut(s) 418
Bpu10I CCTNAGC 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 4 cut(s) 55, 106, 262, 382
BseMII CTCAG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 251, 356
BshFI GGCC 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 358, 489
BsmI GAATGC 2 cut(s) 43, 525
BsnI GGCC 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 1 cut(s) 289
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 6, 291
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 2 cut(s) 284, 297
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 410
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 4 cut(s) 55, 106, 262, 382
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 2 cut(s) 358, 489
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 236, 529
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 230, 239
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 251, 356
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 4 cut(s) 55, 106, 262, 382
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Csp6I GTAC 2 cut(s) 380, 437
CviAII CATG 4 cut(s) 227, 236, 383, 567
CviJI RGCY 4 cut(s) 134, 320, 347, 434
CviKI_1 RGCY 4 cut(s) 134, 320, 347, 434
CviQI GTAC 2 cut(s) 380, 437
DdeI CTNAG 1 cut(s) 410
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 318
Eco32I GATATC 2 cut(s) 74, 106
Eco57I CTGAAG 3 cut(s) 189, 500, 558
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 2 cut(s) 74, 106
FaeI CATG 4 cut(s) 230, 239, 386, 570
FatI CATG 4 cut(s) 226, 235, 382, 566
FauNDI CATATG 1 cut(s) 527
Fnu4HI GCNGC 2 cut(s) 240, 345
FokI GGATG 4 cut(s) 42, 113, 249, 389
Fsp4HI GCNGC 2 cut(s) 240, 345
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 240, 345
HaeIII GGCC 1 cut(s) 320
Hin1II CATG 4 cut(s) 230, 239, 386, 570
HinfI GANTC 3 cut(s) 50, 214, 257
HphI GGTGA 2 cut(s) 152, 323
Hpy188I TCNGA 1 cut(s) 538
HpyAV CCTTC 2 cut(s) 137, 533
HpyCH4V TGCA 3 cut(s) 17, 239, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 529
HpyF3I CTNAG 1 cut(s) 410
Hsp92II CATG 4 cut(s) 230, 239, 386, 570
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 2 cut(s) 146, 563
LpnPI CCDG 3 cut(s) 11, 38, 123
Lsp1109I GCAGC 2 cut(s) 251, 356
LweI GCATC 2 cut(s) 154, 484
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 3 cut(s) 51, 211, 455
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 6 cut(s) 164, 182, 206, 209, 418, 476
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 8 cut(s) 30, 94, 182, 220, 306, 416, 467, 552
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 2 cut(s) 59, 208
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 5 cut(s) 117, 276, 367, 419, 550
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 2 cut(s) 60, 446
Msp20I TGGCCA 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 2 cut(s) 43, 525
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 236, 529
NdeI CATATG 1 cut(s) 527
NdeII GATC 1 cut(s) 289
NlaIII CATG 4 cut(s) 230, 239, 386, 570
NlaIV GGNNCC 2 cut(s) 6, 291
NmuCI GTSAC 2 cut(s) 51, 211
NspI RCATGY 2 cut(s) 230, 239
PctI GAATGC 2 cut(s) 43, 525
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 241, 346
PleI GAGTC 2 cut(s) 58, 208
PpsI GAGTC 2 cut(s) 58, 208
Psp6I CCWGG 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 6, 291
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 381, 438
RsaNI GTAC 2 cut(s) 380, 437
RseI CAYNNNNRTG 2 cut(s) 60, 446
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 240, 345
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 2 cut(s) 59, 208
ScrFI CCNGG 1 cut(s) 26
SetI ASST 6 cut(s) 27, 136, 329, 349, 411, 436
SfaNI GCATC 2 cut(s) 154, 484
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 60, 446
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 8 cut(s) 30, 94, 182, 220, 306, 416, 467, 552
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 24
TaqI TCGA 1 cut(s) 248
TasI AATT 8 cut(s) 30, 94, 182, 220, 306, 416, 467, 552
TatI WGTACW 1 cut(s) 379
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 51, 211
TseI GCWGC 2 cut(s) 239, 344
Tsp45I GTSAC 2 cut(s) 51, 211
TspDTI ATGAA 2 cut(s) 216, 399
TspRI CASTG 1 cut(s) 19
XapI RAATTY 3 cut(s) 30, 182, 467
XceI RCATGY 2 cut(s) 230, 239
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.