pycom07g04960
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000244
Physical Location & Seq
Forward (+)
4245648 .. 4246618
971 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04960.1

Sequence Viewer

Length: 747 bp
ATGTGCGTGTGCGTGCGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTGGGCTTGCGTTTTTCAACAAGTGACTCGCATCCAAAAAAGAAAGCGAAAAGAGATCCCATCGCGGATGCAATTGGTGAGATGGCAAAGTCAGTGAAGGAGTTTTTGGCAAGTCAAGTGAAACCGCGAGCGAGACTCGAAGGAAAGGAGGTACTTGATGTTGTTTTGAAGGTACCAAAACTTAGTAGACTGCAAGTTATGAAGGCTGTACGCATATTACTGAATGGTAATCCAGAAGAATTCTTTCTAGTGAAATCTCTTAATGATTCCCCGAAGAGGGAGTATCGTTTGGTATGCAGACTAGACGGGACGAAACGGAATGGGACGCGACGGGACAGGACGGAACAAAACGGAGCGGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGCCAGAGAGGTTATAATTTTGTGTTCCACGGATGTGGAACGAGTCGTTCCAGGGGATGAGGTGGAACGAAAATTCACCCAAAACTCGTCCCGTGGAACAGCTCGTTCCACCCGTTTTAGGCGCACCAAACGTGGGATGGAACGCCTTGTCCCACTCTGTTCCGTCCCGTCCCACGTACCAAACGGTACCTATGTGGTTGTTTTTCCCTTTATTTTATATATTTCACTTTTTTTAAAACTGAAATCCGTTTGGTTACTACTTTTAGTTTTTAATTTAAAAGAAAATGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

249

Amino Acids

28.37

Weight (kDa)

9.88

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc65I GGTACC 2 cut(s) 223, 638
AccB1I GGYRCC 2 cut(s) 223, 638
AccBSI CCGCTC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 238
AccII CGCG 3 cut(s) 116, 178, 379
AciI CCGC 3 cut(s) 116, 176, 407
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 2 cut(s) 290, 524
AfaI GTAC 5 cut(s) 204, 225, 261, 630, 640
AfiI CCNNNNNNNGG 5 cut(s) 327, 328, 428, 570, 585
AgsI TTSAA 2 cut(s) 69, 220
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 502
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AleI CACNNNNGTG 1 cut(s) 485
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw26I GTCTC 2 cut(s) 42, 178
AlwI GGATC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 290, 524
Asp700I GAANNNNTTC 1 cut(s) 294
Asp718I GGTACC 2 cut(s) 223, 638
AspLEI GCGC 1 cut(s) 576
AsuHPI GGTGA 2 cut(s) 140, 520
BaeI ACNNNNGTAYC 2 cut(s) 630, 663
BanI GGYRCC 2 cut(s) 223, 638
BccI CCATC 4 cut(s) 119, 127, 422, 583
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 42, 178
BfaI CTAG 2 cut(s) 299, 353
Bme1390I CCNGG 1 cut(s) 504
BmgBI CACGTC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 225, 454, 640
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 3 cut(s) 91, 109, 408
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BsaAI YACGTR 1 cut(s) 628
BsaJI CCNNGG 4 cut(s) 423, 480, 503, 544
Bsc4I CCNNNNNNNGG 5 cut(s) 327, 328, 428, 570, 585
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 423, 480, 503, 544
BseGI GGATG 6 cut(s) 82, 124, 433, 490, 514, 594
BseLI CCNNNNNNNGG 5 cut(s) 327, 328, 428, 570, 585
Bsh1236I CGCG 3 cut(s) 116, 178, 379
BshNI GGYRCC 2 cut(s) 223, 638
BslFI GGGAC 7 cut(s) 373, 388, 398, 526, 587, 602, 607
BslI CCNNNNNNNGG 5 cut(s) 327, 328, 428, 570, 585
BsmAI GTCTC 2 cut(s) 42, 178
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 7 cut(s) 373, 388, 398, 526, 587, 602, 607
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 3 cut(s) 116, 176, 407
BspFNI CGCG 3 cut(s) 116, 178, 379
BspLI GGNNCC 3 cut(s) 225, 454, 640
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 2 cut(s) 223, 638
BsrBI CCGCTC 1 cut(s) 407
BssECI CCNNGG 4 cut(s) 423, 480, 503, 544
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 3 cut(s) 14, 59, 180
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 2 cut(s) 480, 544
BstF5I GGATG 6 cut(s) 82, 124, 433, 490, 514, 594
BstFNI CGCG 3 cut(s) 116, 178, 379
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 42, 178
BstMBI GATC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 502
BstUI CGCG 3 cut(s) 116, 178, 379
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 487
BstYI RGATCY 1 cut(s) 106
BtgI CCRYGG 2 cut(s) 480, 544
BtgZI GCGATG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 6 cut(s) 82, 124, 433, 490, 514, 594
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 14, 59, 180
CfoI GCGC 1 cut(s) 576
CseI GACGC 1 cut(s) 385
Csp6I GTAC 5 cut(s) 203, 224, 260, 629, 639
CviJI RGCY 4 cut(s) 57, 257, 455, 554
CviKI_1 RGCY 4 cut(s) 57, 257, 455, 554
CviQI GTAC 5 cut(s) 203, 224, 260, 629, 639
DdeI CTNAG 1 cut(s) 233
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraI TTTAAA 2 cut(s) 687, 729
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 42
FaiI YATR 7 cut(s) 251, 266, 346, 467, 645, 670, 672
FaqI GGGAC 7 cut(s) 373, 388, 398, 526, 587, 602, 607
FauI CCCGC 1 cut(s) 400
FblI GTMKAC 1 cut(s) 238
FokI GGATG 6 cut(s) 69, 131, 440, 497, 521, 601
FspBI CTAG 2 cut(s) 299, 353
GlaI GCGC 1 cut(s) 575
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 576
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HinfI GANTC 4 cut(s) 77, 186, 317, 495
HphI GGTGA 2 cut(s) 140, 520
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 5 cut(s) 142, 185, 214, 247, 443
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 3 cut(s) 51, 583, 627
HpyCH4V TGCA 3 cut(s) 122, 244, 348
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 3 cut(s) 51, 583, 627
HspAI GCGC 1 cut(s) 574
KpnI GGTACC 2 cut(s) 227, 642
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 3 cut(s) 404, 410, 452
LpnPI CCDG 5 cut(s) 297, 373, 469, 489, 516
LweI GCATC 3 cut(s) 91, 109, 408
MaeI CTAG 2 cut(s) 299, 353
MaeII ACGT 3 cut(s) 51, 583, 627
MaeIII GTNAC 2 cut(s) 74, 705
MalI GATC 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 407
MboI GATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 299, 337, 455, 458
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 106
MluCI AATT 5 cut(s) 123, 290, 468, 524, 724
MlyI GAGTC 3 cut(s) 71, 180, 504
MnlI CCTC 6 cut(s) 193, 321, 433, 433, 454, 505
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 4 cut(s) 312, 686, 723, 728
MslI CAYNNNNRTG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 504
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 504
MvnI CGCG 3 cut(s) 116, 178, 379
NdeII GATC 1 cut(s) 106
NlaIV GGNNCC 3 cut(s) 225, 454, 640
NmuCI GTSAC 1 cut(s) 74
OliI CACNNNNGTG 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 317
PleI GAGTC 3 cut(s) 71, 180, 503
PpsI GAGTC 3 cut(s) 71, 180, 503
Ppu21I YACGTR 1 cut(s) 628
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 225, 454, 640
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 5 cut(s) 204, 225, 261, 630, 640
RsaNI GTAC 5 cut(s) 203, 224, 260, 629, 639
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 4 cut(s) 312, 686, 723, 728
Sau3AI GATC 1 cut(s) 106
SchI GAGTC 3 cut(s) 71, 180, 504
ScrFI CCNGG 1 cut(s) 504
SetI ASST 9 cut(s) 54, 204, 225, 465, 516, 556, 586, 630, 644
SfaNI GCATC 3 cut(s) 91, 109, 408
SmiMI CAYNNNNRTG 1 cut(s) 485
Sse9I AATT 5 cut(s) 123, 290, 468, 524, 724
SsiI CCGC 3 cut(s) 116, 176, 407
SspMI CTAG 2 cut(s) 299, 353
StyD4I CCNGG 1 cut(s) 502
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 3 cut(s) 54, 586, 630
TaqI TCGA 1 cut(s) 189
TasI AATT 5 cut(s) 123, 290, 468, 524, 724
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 4 cut(s) 312, 686, 723, 728
Tru9I TTAA 4 cut(s) 312, 686, 723, 728
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 6 cut(s) 382, 407, 417, 497, 604, 688
TspRI CASTG 1 cut(s) 150
XapI RAATTY 2 cut(s) 290, 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 299, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.