RLG00000029956
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000244
Physical Location & Seq
Reverse (-)
52141260 .. 52142426
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029956

Sequence Viewer

Length: 402 bp
ATGGAAAAATCTCAAGGTGTTGTGCCTGTGTCCAATTTCAACATAAAGGGCAAGGTCAAAGGAACAGGTACATCTAGGGCATATCTCTCTTGGAACAAAGAAATGGATGATGTACTCGCTAAAGTACTTTATGATCAAATGAATGCAGGACACAAGGCTGATGGAGACTGGAAACCGCAAGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAACTTGGTCTCACAAAACTTAATGTCAAGAATAGACTCAAGGCTTGGAAGAGACATTATGCTATTATCACAGACATCAGAAGTCAAAGTGGGCTTGTTTGGGATGAAGAGAAAAAGATAGTTCCAATCACTGCTGAAAACCTTCACATCCTAATGCTAAAGGATAACAAAACAAGTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

9.6

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 30 - 114 9.9e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AfaI GTAC 3 cut(s) 70, 114, 126
AgsI TTSAA 2 cut(s) 40, 208
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 3 cut(s) 159, 233, 265
Asp700I GAANNNNTTC 1 cut(s) 360
BccI CCATC 1 cut(s) 155
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 159, 233, 265
BfaI CTAG 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 112, 328, 366
BseNI ACTGG 1 cut(s) 173
BsmAI GTCTC 3 cut(s) 159, 233, 265
BsmI GAATGC 2 cut(s) 148, 214
Bso31I GGTCTC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 173
BssMI GATC 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 263, 321
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 3 cut(s) 112, 328, 366
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 3 cut(s) 159, 233, 265
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 112, 328, 366
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 180
Csp6I GTAC 3 cut(s) 69, 113, 125
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 158, 182, 263, 313
CviKI_1 RGCY 4 cut(s) 158, 182, 263, 313
CviQI GTAC 3 cut(s) 69, 113, 125
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 263, 321
EarI CTCTTC 2 cut(s) 263, 321
Eco31I GGTCTC 1 cut(s) 233
FaeI CATG 1 cut(s) 219
FaiI YATR 5 cut(s) 44, 82, 132, 217, 279
FatI CATG 1 cut(s) 215
FbaI TGATCA 1 cut(s) 133
FokI GGATG 3 cut(s) 119, 335, 353
FspBI CTAG 1 cut(s) 75
Hin1II CATG 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 371
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
Hsp92II CATG 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 39, 51, 132, 154
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 280, 338
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 371
Mva1269I GAATGC 2 cut(s) 148, 214
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 219
PctI GAATGC 2 cut(s) 148, 214
PdmI GAANNNNTTC 1 cut(s) 360
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
RsaI GTAC 3 cut(s) 70, 114, 126
RsaNI GTAC 3 cut(s) 69, 113, 125
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 126
SchI GAGTC 1 cut(s) 249
SetI ASST 5 cut(s) 19, 57, 70, 184, 363
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 12, 257
SmoI CTYRAG 2 cut(s) 12, 257
Sse9I AATT 1 cut(s) 34
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 75
TasI AATT 1 cut(s) 34
TatI WGTACW 2 cut(s) 112, 124
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 155, 339
TspRI CASTG 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.