Rmu_sc0004390.1_g000008
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004390.1
OG0000244
Physical Location & Seq
Forward (+)
35436 .. 37980
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004390.1_g000008.1.cds

Sequence Viewer

Length: 549 bp
atgttggtggcaccaccaacactaagagccaccgtaatgaagctttcaaagcgcctcaatcatgggagtctgagcacagagatgtatgttctcaatgtggagcttccggtcattgggcacatgcttgtagaagtgagtatgatgtctaggaagtctcatgatgaagctgtaagctctcgatttaaaagaatcctaaattgggatgatatagttaatttgtgtggcaaagatagagccactggagagggtgctaaaacaggttttgaagccattgaggttatgactcctcctgctaatgaagatagtcatattgatttggaaggtgataaccaagcatcagaagatattcacattattgaagacatttcaccaaaccaagcaagttctcagaaaaagagaaatgaagctacagtatcttctagtgtacctcctccaaagagaagagttacaactaaagatgttttgggtacttcagtggatagcatgacttcatcttttgaagaactcatccatgctactacaccaagtcatgcccgaaagatgtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

5.97

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 2 cut(s) 426, 469
AfiI CCNNNNNNNGG 2 cut(s) 113, 199
AgsI TTSAA 4 cut(s) 48, 266, 359, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AluBI AGCT 5 cut(s) 43, 103, 167, 174, 407
AluI AGCT 5 cut(s) 43, 103, 167, 174, 407
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 335, 360
BaeGI GKGCMC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 2 cut(s) 147, 420
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 199
Bse1I ACTGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 208, 507
BseLI CCNNNNNNNGG 2 cut(s) 113, 199
BseMII CTCAG 2 cut(s) 62, 401
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 276, 420
BseSI GKGCMC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 113, 199
BsmAI GTCTC 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 77, 120
BspCNI CTCAG 2 cut(s) 63, 400
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 34, 412
Bst6I CTCTTC 1 cut(s) 436
BstDEI CTNAG 3 cut(s) 23, 71, 387
BstF5I GGATG 2 cut(s) 208, 507
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 366
BtsCI GGATG 2 cut(s) 208, 507
BtsIMutI CAGTG 2 cut(s) 237, 480
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 425, 468
CviAII CATG 6 cut(s) 62, 121, 158, 484, 512, 530
CviJI RGCY 8 cut(s) 29, 43, 103, 167, 174, 236, 269, 407
CviKI_1 RGCY 8 cut(s) 29, 43, 103, 167, 174, 236, 269, 407
CviQI GTAC 2 cut(s) 425, 468
DdeI CTNAG 3 cut(s) 23, 71, 387
DraI TTTAAA 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 456
FaeI CATG 6 cut(s) 65, 124, 161, 487, 515, 533
FatI CATG 6 cut(s) 61, 120, 157, 483, 511, 529
FokI GGATG 2 cut(s) 215, 494
FspBI CTAG 2 cut(s) 147, 420
GlaI GCGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 55
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 54
Hin1II CATG 6 cut(s) 65, 124, 161, 487, 515, 533
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 3 cut(s) 67, 189, 283
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 335, 360
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 72, 340, 390
Hpy188III TCNNGA 2 cut(s) 158, 177
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 2 cut(s) 34, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 3 cut(s) 23, 71, 387
Hsp92II CATG 6 cut(s) 65, 124, 161, 487, 515, 533
HspAI GCGC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 120, 225, 243, 303
LweI GCATC 1 cut(s) 344
MaeI CTAG 2 cut(s) 147, 420
MaeIII GTNAC 1 cut(s) 445
MboII GAAGA 6 cut(s) 311, 353, 371, 408, 453, 512
MhlI GDGCHC 2 cut(s) 77, 120
MluCI AATT 2 cut(s) 196, 214
MlyI GAGTC 2 cut(s) 76, 277
MnlI CCTC 6 cut(s) 65, 238, 268, 297, 438, 441
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 2 cut(s) 183, 213
MslI CAYNNNNRTG 2 cut(s) 35, 80
MspI CCGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 49
NlaIII CATG 6 cut(s) 65, 124, 161, 487, 515, 533
NlaIV GGNNCC 1 cut(s) 12
NspI RCATGY 1 cut(s) 124
PagI TCATGA 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 189
PleI GAGTC 2 cut(s) 75, 277
PpsI GAGTC 2 cut(s) 75, 277
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 426, 469
RsaNI GTAC 2 cut(s) 425, 468
RseI CAYNNNNRTG 2 cut(s) 35, 80
SaqAI TTAA 2 cut(s) 183, 213
SchI GAGTC 2 cut(s) 76, 277
SduI GDGCHC 2 cut(s) 77, 120
SetI ASST 9 cut(s) 45, 105, 169, 176, 262, 279, 325, 409, 430
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 35, 80
Sse9I AATT 2 cut(s) 196, 214
SspMI CTAG 2 cut(s) 147, 420
TaaI ACNGT 2 cut(s) 34, 412
TaqI TCGA 1 cut(s) 178
TasI AATT 2 cut(s) 196, 214
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 2 cut(s) 183, 213
Tru9I TTAA 2 cut(s) 183, 213
TscAI CASTG 2 cut(s) 244, 480
TspDTI ATGAA 5 cut(s) 53, 177, 312, 417, 480
TspRI CASTG 2 cut(s) 244, 480
XceI RCATGY 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 2 cut(s) 147, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.