Prupe.4G256700_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000244
Physical Location & Seq
Reverse (-)
18065280 .. 18066061
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G256700.1

Sequence Viewer

Length: 687 bp
ATGGCAGAGAAAGCAACCAAACTAAAGCAGAGGAAAATGAAAGAGAAGCAAGGTAATGAACATGAAGGAGAAGAAAAATGTTATTTACGTTGGAACATACAAATGGATCGTTCATTAGCAGAGATACTTAGAGAAGAATGCCAAATGGTTCACAAAGGAGATGGTGGTTGGAAATCAGTTGCTTATAACACTGCTGCAGCCATATTGTCTGCCCAATATAATATTGAAGTAAGTGCTGATAACATTAAAAATCGTGTCAAGACATGGAAAAGGTTTTATGCTGTAGTCAGTGACATATTAAGTCAGAGTGGATTTAGTTGGGATGCAACAAAAAAGATGATCACTATAGATGAAGAGAATGTTTGGAATGAGTATGTGAAGTCTCAGGAAGATGCTAGAACTTTTCGATATAAAGTAATTGCAAATTGGGATGATATAGTGGATTTATGTGGCAAAGATAGAGCTACTGGAGAGGGTGCTGAAACATGTTCTGAAGCTGCTGAGGTTATGACACTGATAGCGAACCGAATAATTTTGTTGACTTGGGTGCTAATACTCAAGGTTTTGAGAATTCTCACATTGATGATGTCTCACCCAATTCTAGCTGTCCAAAGAAAAGAAATCAACCATCTTCTGAAATTCGCCCACCAAAGAAAAGAGGTACTCCTAATGTTCTTGCTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

229

Amino Acids

26.41

Weight (kDa)

8.57

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 2 cut(s) 570, 638
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 663
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 3 cut(s) 464, 497, 605
AluI AGCT 3 cut(s) 464, 497, 605
Alw26I GTCTC 2 cut(s) 387, 594
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 194, 197, 497
ApoI RAATTY 2 cut(s) 570, 638
AsuHPI GGTGA 1 cut(s) 584
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 181, 209, 484
BccI CCATC 2 cut(s) 155, 636
BclI TGATCA 1 cut(s) 339
BcoDI GTCTC 2 cut(s) 387, 594
BfaI CTAG 2 cut(s) 396, 602
BfmI CTRYAG 3 cut(s) 195, 282, 345
BisI GCNGC 3 cut(s) 195, 198, 498
BlsI GCNGC 3 cut(s) 196, 199, 499
BmsI GCATC 2 cut(s) 313, 382
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 472
BseGI GGATG 2 cut(s) 328, 436
BseMII CTCAG 2 cut(s) 398, 492
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 3 cut(s) 181, 209, 484
BsmAI GTCTC 2 cut(s) 387, 594
BsmI GAATGC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 106, 339
BspCNI CTCAG 2 cut(s) 397, 493
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 472
BssMI GATC 2 cut(s) 106, 339
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 128, 384, 501
BstF5I GGATG 2 cut(s) 328, 436
BstKTI GATC 2 cut(s) 109, 342
BstMAI GTCTC 2 cut(s) 387, 594
BstMBI GATC 2 cut(s) 106, 339
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 489
BstSFI CTRYAG 3 cut(s) 195, 282, 345
BstV1I GCAGC 3 cut(s) 181, 209, 484
BtsCI GGATG 2 cut(s) 328, 436
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 295, 512
Csp6I GTAC 1 cut(s) 662
CviAII CATG 3 cut(s) 62, 264, 486
CviJI RGCY 4 cut(s) 200, 464, 497, 605
CviKI_1 RGCY 4 cut(s) 200, 464, 497, 605
CviQI GTAC 1 cut(s) 662
DdeI CTNAG 3 cut(s) 128, 384, 501
DpnI GATC 2 cut(s) 108, 341
DpnII GATC 2 cut(s) 106, 339
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 570
FaeI CATG 3 cut(s) 65, 267, 489
FatI CATG 3 cut(s) 61, 263, 485
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 195, 198, 498
FokI GGATG 2 cut(s) 335, 443
Fsp4HI GCNGC 3 cut(s) 195, 198, 498
FspBI CTAG 2 cut(s) 396, 602
GluI GCNGC 3 cut(s) 195, 198, 498
GsuI CTGGAG 1 cut(s) 489
Hin1II CATG 3 cut(s) 65, 267, 489
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 151, 540
Hpy188I TCNGA 3 cut(s) 306, 493, 636
Hpy188III TCNNGA 2 cut(s) 259, 386
Hpy8I GTNNAC 2 cut(s) 151, 540
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 197, 326, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 128, 384, 501
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 65, 267, 489
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 2 cut(s) 106, 339
LpnPI CCDG 2 cut(s) 371, 453
Lsp1109I GCAGC 3 cut(s) 181, 209, 484
LweI GCATC 2 cut(s) 313, 382
MaeI CTAG 2 cut(s) 396, 602
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 108, 341
MboI GATC 2 cut(s) 106, 339
MboII GAAGA 5 cut(s) 83, 146, 365, 401, 623
MluCI AATT 6 cut(s) 417, 424, 531, 570, 597, 638
MmeI TCCRAC 2 cut(s) 71, 149
MnlI CCTC 4 cut(s) 24, 466, 496, 652
MseI TTAA 2 cut(s) 246, 299
MslI CAYNNNNRTG 2 cut(s) 101, 581
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 106, 339
NlaIII CATG 3 cut(s) 65, 267, 489
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 489
PciI ACATGT 1 cut(s) 485
PctI GAATGC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 196, 199, 499
PscI ACATGT 1 cut(s) 485
PsiI TTATAA 1 cut(s) 186
PstI CTGCAG 1 cut(s) 199
RsaI GTAC 1 cut(s) 663
RsaNI GTAC 1 cut(s) 662
RseI CAYNNNNRTG 2 cut(s) 101, 581
SaqAI TTAA 2 cut(s) 246, 299
SatI GCNGC 3 cut(s) 195, 198, 498
Sau3AI GATC 2 cut(s) 106, 339
SetI ASST 9 cut(s) 55, 91, 275, 466, 499, 507, 564, 607, 663
SfaNI GCATC 2 cut(s) 313, 382
SfcI CTRYAG 3 cut(s) 195, 282, 345
SmiMI CAYNNNNRTG 2 cut(s) 101, 581
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 6 cut(s) 417, 424, 531, 570, 597, 638
SspI AATATT 1 cut(s) 223
SspMI CTAG 2 cut(s) 396, 602
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 406
TasI AATT 6 cut(s) 417, 424, 531, 570, 597, 638
Tru1I TTAA 2 cut(s) 246, 299
Tru9I TTAA 2 cut(s) 246, 299
TscAI CASTG 3 cut(s) 196, 295, 519
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 194, 197, 497
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 53, 72, 78, 102, 366
TspRI CASTG 3 cut(s) 196, 295, 519
XapI RAATTY 2 cut(s) 570, 638
XceI RCATGY 1 cut(s) 489
XspI CTAG 2 cut(s) 396, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.