Prupe.2G078000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000244
Physical Location & Seq
Forward (+)
12017537 .. 12023973
6437 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G078000.1

Sequence Viewer

Length: 498 bp
ATGATGTTTCATAATGATCAGACAGATGAAACAAGTGAAGAATCTGTTGTTGGATTTACTCCTCCTCCTGCACCTGCTTCGGAGCCAAGTCCTCCACAGCTTAATCAGCCTCCTCTGTCCCAGACAAAAAGCTTTGAGAAGTTTTCTATAAAGCTGAGAAAGCGCATGGCCCGACTTGCCAATGAGGTCGTTAAGCTCACCGGTTGCGTACATTGGGGCATCCCATTGAAAGAGCCATTTACAGAAAATATGGAGGTTAAACAAGAAAATGATGAGAATTTTATTCCCAACTCACATACTTCGACACATCTATCAACTTCAATTTCTGGCTTGCATCCAAATAAGAAAGCGAAAAAACATCCATTGGCACAAGCAATTGGTGAGGCGGCAGACTCACAAAAGGAGTTTTCGGCAAGTCAAATGAACCGCAACTCAGAGGAGAGGATGTACTTGCAGTGGTCTCAAAGATACCGAACTTCAGTAGATTGCAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.73

Weight (kDa)

7.02

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 82
AciI CCGC 2 cut(s) 386, 427
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 210, 449
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 2 cut(s) 229, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 4 cut(s) 100, 132, 154, 196
AluI AGCT 4 cut(s) 100, 132, 154, 196
Alw26I GTCTC 1 cut(s) 465
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 277
AsiGI ACCGGT 1 cut(s) 200
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 190, 392
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 465
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 2 cut(s) 228, 343
BsaI GGTCTC 1 cut(s) 465
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 431, 461
Bse118I RCCGGY 1 cut(s) 200
BseGI GGATG 4 cut(s) 219, 334, 358, 450
BseMII CTCAG 2 cut(s) 146, 447
BseRI GAGGAG 4 cut(s) 51, 54, 102, 452
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 465
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 2 cut(s) 386, 427
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 147, 446
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 155, 433
BstF5I GGATG 4 cut(s) 219, 334, 358, 450
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 106, 160, 176
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 4 cut(s) 219, 334, 358, 450
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 461
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 209, 448
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 1 cut(s) 166
CviJI RGCY 9 cut(s) 85, 100, 109, 132, 154, 170, 196, 235, 330
CviKI_1 RGCY 9 cut(s) 85, 100, 109, 132, 154, 170, 196, 235, 330
CviQI GTAC 2 cut(s) 209, 448
DdeI CTNAG 2 cut(s) 155, 433
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 462
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 12, 149, 167, 251, 297
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 165
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 4 cut(s) 206, 321, 345, 457
Fsp4HI GCNGC 1 cut(s) 387
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 165
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 2 cut(s) 41, 392
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 190, 392
Hpy188I TCNGA 3 cut(s) 21, 82, 436
HpyCH4V TGCA 4 cut(s) 71, 334, 454, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 160, 176
HpyF3I CTNAG 2 cut(s) 155, 433
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 5 cut(s) 81, 87, 134, 214, 312
LweI GCATC 2 cut(s) 228, 343
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 375
MluCI AATT 3 cut(s) 277, 321, 375
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 31
MseI TTAA 3 cut(s) 102, 192, 258
MspI CCGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 106, 160, 176
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 84
PaqCI CACCTGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 2 cut(s) 210, 449
RsaNI GTAC 2 cut(s) 209, 448
SaqAI TTAA 3 cut(s) 102, 192, 258
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 386
SetI ASST 7 cut(s) 76, 102, 134, 156, 189, 198, 258
SfaNI GCATC 2 cut(s) 228, 343
Sse9I AATT 3 cut(s) 277, 321, 375
SsiI CCGC 2 cut(s) 386, 427
TaqI TCGA 1 cut(s) 302
TasI AATT 3 cut(s) 277, 321, 375
TatI WGTACW 1 cut(s) 447
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 3 cut(s) 102, 192, 258
Tru9I TTAA 3 cut(s) 102, 192, 258
TscAI CASTG 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 42, 437
TspRI CASTG 1 cut(s) 461
XapI RAATTY 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.