Rmu_sc0008927.1_g000001
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008927.1
OG0000244
Physical Location & Seq
Reverse (-)
5476 .. 6313
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008927.1_g000001.1.cds

Sequence Viewer

Length: 750 bp
atgagtagacttggaggaaacgaggtcaaaaaccgaaaaccaaatggaaagaatgaaggaaagagcaaaggaaaggctgaaggcaagaactatttgcagtggaatttagatatggagcgtgctttggctgatatacttcatgaggaacgaggtctgggccataaaggagataatggttggaaagctatagcttataatacagctgctgatattttatctgcacagtttgatattcaaatatctgctgacaatataaaaaaccgtgtgaaatcatggaaaaagttttacggaattgttagtgatatcttgagccaaagtggatttagctgggattcctcaacacaaatgataagcattgatgaaaacagtgtatgggaagaatatgtgaagtctcatgatgaagctataagctttcggtttaaaagaatcccaaattgggatgatatagttgattacatttcaccgaaccaagcaagttctcagaaaaagagaaatgaagcaacaatctcttctagtgtacctcctccaaagagaagagttacaactaaagatgtcttgggtacttctgcggatagaatggcttcatcttttgaagaactcattcgtgctactacaaaaagtcttgccccgaaagatgtatggacagaaatcatggcaataacagatctttctagagaagaacaaataaaagcatgcgcttggtttatagagaacgacaaacagtttctcatgttgaaggaagctgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

249

Amino Acids

28.2

Weight (kDa)

7.75

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccI GTMKAC 1 cut(s) 7
AciI CCGC 1 cut(s) 569
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 519, 562
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 236, 593, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 7 cut(s) 185, 191, 203, 327, 404, 411, 743
AluI AGCT 7 cut(s) 185, 191, 203, 327, 404, 411, 743
Alw26I GTCTC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 203, 743
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 2 cut(s) 580, 600
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 453
BbvI GCAGC 2 cut(s) 190, 730
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 2 cut(s) 513, 672
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 664
BisI GCNGC 2 cut(s) 204, 744
BlsI GCNGC 2 cut(s) 205, 745
BmgT120I GGNCC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 436
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 2 cut(s) 190, 730
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 664
BspACI CCGC 1 cut(s) 569
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 493
BspHI TCATGA 2 cut(s) 139, 394
BssMI GATC 1 cut(s) 664
Bst4CI ACNGT 4 cut(s) 225, 263, 368, 723
Bst6I CTCTTC 2 cut(s) 514, 529
BstC8I GCNNGC 2 cut(s) 120, 694
BstDEI CTNAG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 1 cut(s) 667
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 664
BstNSI RCATGY 1 cut(s) 696
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 190, 730
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 104, 373
Cac8I GCNNGC 2 cut(s) 120, 694
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 2 cut(s) 139, 394
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 518, 561
CviAII CATG 6 cut(s) 140, 273, 395, 652, 693, 730
CviQI GTAC 2 cut(s) 518, 561
DdeI CTNAG 1 cut(s) 480
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 514, 529
EarI CTCTTC 2 cut(s) 514, 529
Eco32I GATATC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 304
FaeI CATG 6 cut(s) 143, 276, 398, 655, 696, 733
FatI CATG 6 cut(s) 139, 272, 394, 651, 692, 729
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 204, 744
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 204, 744
FspBI CTAG 2 cut(s) 513, 672
GlaI GCGC 1 cut(s) 697
GluI GCNGC 2 cut(s) 204, 744
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 159
HhaI GCGC 1 cut(s) 698
Hin1II CATG 6 cut(s) 143, 276, 398, 655, 696, 733
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 332, 426
HphI GGTGA 1 cut(s) 453
Hpy166II GTNNAC 2 cut(s) 8, 518
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 4 cut(s) 140, 307, 395, 672
Hpy8I GTNNAC 2 cut(s) 8, 518
HpyAV CCTTC 3 cut(s) 50, 74, 730
HpyCH4III ACNGT 4 cut(s) 225, 263, 368, 723
HpyCH4V TGCA 3 cut(s) 97, 221, 746
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 6 cut(s) 143, 276, 398, 655, 696, 733
HspAI GCGC 1 cut(s) 696
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 2 cut(s) 140, 313
Lsp1109I GCAGC 2 cut(s) 190, 730
MaeI CTAG 2 cut(s) 513, 672
MaeIII GTNAC 1 cut(s) 538
MalI GATC 1 cut(s) 666
MboI GATC 1 cut(s) 664
MboII GAAGA 5 cut(s) 389, 501, 546, 605, 689
MflI RGATCY 1 cut(s) 664
MluCI AATT 3 cut(s) 103, 291, 433
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 7 cut(s) 8, 16, 136, 143, 346, 531, 534
MroXI GAANNNNTTC 2 cut(s) 580, 600
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 203
NdeII GATC 1 cut(s) 664
NlaIII CATG 6 cut(s) 143, 276, 398, 655, 696, 733
NspI RCATGY 1 cut(s) 696
PaeI GCATGC 1 cut(s) 696
PagI TCATGA 2 cut(s) 139, 394
PdmI GAANNNNTTC 2 cut(s) 580, 600
PfeI GAWTC 2 cut(s) 332, 426
PkrI GCNGC 2 cut(s) 205, 745
PsiI TTATAA 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 519, 562
RsaNI GTAC 2 cut(s) 518, 561
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 204, 744
Sau3AI GATC 1 cut(s) 664
Sau96I GGNCC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 696
Sse9I AATT 3 cut(s) 103, 291, 433
SsiI CCGC 1 cut(s) 569
SspMI CTAG 2 cut(s) 513, 672
TaaI ACNGT 4 cut(s) 225, 263, 368, 723
TasI AATT 3 cut(s) 103, 291, 433
TfiI GAWTC 2 cut(s) 332, 426
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 104, 373
TseI GCWGC 2 cut(s) 203, 743
TspDTI ATGAA 6 cut(s) 69, 128, 375, 414, 510, 573
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 104, 373
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 671
XceI RCATGY 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 2 cut(s) 580, 600
XspI CTAG 2 cut(s) 513, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.