Rw3G014930
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000244
Physical Location & Seq
Forward (+)
15164255 .. 15165275
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G014930.1

Sequence Viewer

Length: 837 bp
ATGAGTAGACTTGGAGGAAACGAGGTCAAAAACCGAAAACCAAATGGAAAGAGCAAAGGAAAGGCTGAAGGCAAGAACTATTTGCAGTGGAATTTAGATATGGAGCATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGTTGATATTTTATCTGCACAGTTTGATATTCAAATATCTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAACTGTTCTATGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTTAACACAAATGATAAGCGTTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTATAAGGTTTCGGTTTAAAAGAATCCTAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCATTGGAGAGGGTGCTAAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGGTGATAACCAAGCATCAGAAGATATTCACATCATTGAGAACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAACAGTCTCTTCTAGTGTACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTGGGTACTTCAGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAATCTTTCTAGAGAAGAACAAATAAAAGCATGCACTTGGTTTATAGAAAACGACAAACAGTTTCTCATGTTGAAGGAAGTCCCACTGGAAATGAAAAAAGATATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

278

Amino Acids

31.49

Weight (kDa)

5.57

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 34 - 107 3.6e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccI GTMKAC 1 cut(s) 7
AclWI GGATC 1 cut(s) 835
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 2 cut(s) 87, 630
AfaI GTAC 2 cut(s) 600, 643
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 3 cut(s) 173, 674, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 5 cut(s) 122, 128, 140, 264, 341
AluI AGCT 5 cut(s) 122, 128, 140, 264, 341
Alw26I GTCTC 2 cut(s) 333, 592
AlwI GGATC 1 cut(s) 835
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 4 cut(s) 218, 519, 661, 681
AsuHPI GGTGA 2 cut(s) 509, 534
AsuII TTCGAA 1 cut(s) 438
BaeI ACNNNNGTAYC 2 cut(s) 633, 666
BcoDI GTCTC 2 cut(s) 333, 592
BfaI CTAG 2 cut(s) 594, 708
BfmI CTRYAG 1 cut(s) 123
BmsI GCATC 1 cut(s) 518
Bpu14I TTCGAA 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 789
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 438, 575
BseNI ACTGG 1 cut(s) 789
BseRI GAGGAG 2 cut(s) 450, 594
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 333, 592
BsmFI GGGAC 1 cut(s) 764
Bsp119I TTCGAA 1 cut(s) 438
Bsp143I GATC 1 cut(s) 827
BspCNI CTCAG 2 cut(s) 439, 574
BspHI TCATGA 1 cut(s) 331
BspPI GGATC 1 cut(s) 835
BspT104I TTCGAA 1 cut(s) 438
BsrI ACTGG 1 cut(s) 789
BssMI GATC 1 cut(s) 827
Bst4CI ACNGT 6 cut(s) 162, 200, 219, 305, 586, 759
Bst6I CTCTTC 2 cut(s) 595, 610
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 2 cut(s) 447, 561
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 1 cut(s) 830
BstMAI GTCTC 2 cut(s) 333, 592
BstMBI GATC 1 cut(s) 827
BstNSI RCATGY 1 cut(s) 732
BstSFI CTRYAG 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 827
BstYI RGATCY 1 cut(s) 827
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 5 cut(s) 92, 310, 444, 654, 782
Cac8I GCNNGC 1 cut(s) 730
CciI TCATGA 1 cut(s) 331
Csp6I GTAC 2 cut(s) 599, 642
CviAII CATG 5 cut(s) 210, 332, 482, 729, 766
CviQI GTAC 2 cut(s) 599, 642
DdeI CTNAG 2 cut(s) 447, 561
DpnI GATC 1 cut(s) 829
DpnII GATC 1 cut(s) 827
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 595, 610
EarI CTCTTC 2 cut(s) 595, 610
Eco32I GATATC 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 87, 630
EcoRV GATATC 1 cut(s) 241
FaeI CATG 5 cut(s) 213, 335, 485, 732, 769
FaqI GGGAC 1 cut(s) 764
FatI CATG 5 cut(s) 209, 331, 481, 728, 765
FauNDI CATATG 1 cut(s) 823
FblI GTMKAC 1 cut(s) 7
FokI GGATG 1 cut(s) 389
FspBI CTAG 2 cut(s) 594, 708
GsaI CCCAGC 1 cut(s) 268
Hin1II CATG 5 cut(s) 213, 335, 485, 732, 769
HinfI GANTC 3 cut(s) 269, 363, 457
HphI GGTGA 2 cut(s) 509, 534
Hpy166II GTNNAC 2 cut(s) 8, 599
Hpy188I TCNGA 2 cut(s) 514, 564
Hpy188III TCNNGA 3 cut(s) 244, 332, 708
Hpy8I GTNNAC 2 cut(s) 8, 599
HpyAV CCTTC 3 cut(s) 62, 488, 766
HpyCH4III ACNGT 6 cut(s) 162, 200, 219, 305, 586, 759
HpyCH4V TGCA 4 cut(s) 85, 158, 732, 833
HpyF3I CTNAG 2 cut(s) 447, 561
Hsp92II CATG 5 cut(s) 213, 335, 485, 732, 769
Kzo9I GATC 1 cut(s) 827
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 250, 417, 477, 770
LweI GCATC 1 cut(s) 518
MaeI CTAG 2 cut(s) 594, 708
MaeIII GTNAC 1 cut(s) 619
MalI GATC 1 cut(s) 829
MboI GATC 1 cut(s) 827
MboII GAAGA 7 cut(s) 326, 485, 527, 582, 627, 686, 725
MflI RGATCY 1 cut(s) 827
MluCI AATT 3 cut(s) 91, 228, 370
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 7 cut(s) 8, 16, 412, 442, 471, 612, 615
MroXI GAANNNNTTC 4 cut(s) 218, 519, 661, 681
MseI TTAA 2 cut(s) 275, 357
MspA1I CMGCKG 1 cut(s) 140
NdeI CATATG 1 cut(s) 823
NdeII GATC 1 cut(s) 827
NlaIII CATG 5 cut(s) 213, 335, 485, 732, 769
NspI RCATGY 1 cut(s) 732
NspV TTCGAA 1 cut(s) 438
PaeI GCATGC 1 cut(s) 732
PagI TCATGA 1 cut(s) 331
PdmI GAANNNNTTC 4 cut(s) 218, 519, 661, 681
PfeI GAWTC 2 cut(s) 269, 363
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PsiI TTATAA 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 827
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 600, 643
RsaNI GTAC 2 cut(s) 599, 642
SaqAI TTAA 2 cut(s) 275, 357
Sau3AI GATC 1 cut(s) 827
SchI GAGTC 1 cut(s) 451
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SphI GCATGC 1 cut(s) 732
Sse9I AATT 3 cut(s) 91, 228, 370
SspMI CTAG 2 cut(s) 594, 708
TaaI ACNGT 6 cut(s) 162, 200, 219, 305, 586, 759
TaqI TCGA 2 cut(s) 438, 486
TasI AATT 3 cut(s) 91, 228, 370
TfiI GAWTC 2 cut(s) 269, 363
Tru1I TTAA 2 cut(s) 275, 357
Tru9I TTAA 2 cut(s) 275, 357
TscAI CASTG 5 cut(s) 92, 310, 451, 654, 789
TspDTI ATGAA 7 cut(s) 312, 351, 486, 591, 654, 806, 810
TspRI CASTG 5 cut(s) 92, 310, 451, 654, 789
XapI RAATTY 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 707
XceI RCATGY 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 4 cut(s) 218, 519, 661, 681
XspI CTAG 2 cut(s) 594, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.