Rroxscaffold_7G00158580
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000244
Physical Location & Seq
Reverse (-)
1957576 .. 1961981
4406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158580.1

Sequence Viewer

Length: 663 bp
ATGGTTCCAATCACTGCTGAAAACCTGGAAATTTGGAATGCATATGTTGAGTCACATCCTAATGCTAAAGGATATCAAAACAAGTCAATAGAAAACTGGGATGATATCGCTATGCTATGTGGGAGGGATAGAGCTACTGGTGAAGGAGCAGAAGATGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGAAAATGAAAGTCATGTGACTCCCAATTCATATGCCTCAACACATGCAGCAACTTCAACTTGTGATTCACATCCTCCAAATAAGAAAAAGAAAAAAGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAGGAATTTATGGCAGCTCAAGTCTCTCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTAGCAAATCTCAGCAAATTGCAAGTTTTCAAAGCTGTAAGCATATTGATGAGTGGTAACCCCGAAGAATTTTCTCTATTGAAGTCTCTTAATGATGCTGAAAAGAGTGAGTGGATAAAAATGCTCATATGGCAATCTGAAGGTATGTTTGTTCCCACTTTCTCTCATGTTTCAACTATTGGATCTGCTCATACGACAACCAAGGAATTGAGGGTGGAGCATTACAATTTGGATTTTCATGATATGGAATTATGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

220

Amino Acids

24.57

Weight (kDa)

4.91

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 287, 592
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 4 cut(s) 30, 182, 338, 470
AcuI CTGAAG 2 cut(s) 189, 561
AfaI GTAC 1 cut(s) 384
AgsI TTSAA 6 cut(s) 188, 252, 334, 433, 484, 576
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 3 cut(s) 134, 350, 437
AluI AGCT 3 cut(s) 134, 350, 437
Alw26I GTCTC 2 cut(s) 361, 492
AlwI GGATC 2 cut(s) 287, 592
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 242, 347
ApoI RAATTY 4 cut(s) 30, 182, 338, 470
AsuHPI GGTGA 1 cut(s) 152
BalI TGGCCA 1 cut(s) 323
BbvI GCAGC 2 cut(s) 254, 359
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 361, 492
BfaI CTAG 1 cut(s) 299
BisI GCNGC 2 cut(s) 243, 348
BlsI GCNGC 2 cut(s) 244, 349
Bme1390I CCNGG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 26
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 2 cut(s) 154, 487
BmuI ACTGGG 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 603
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bse1I ACTGG 2 cut(s) 101, 142
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 4 cut(s) 55, 106, 265, 385
BseJI GATNNNNATC 1 cut(s) 264
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 2 cut(s) 101, 142
BseXI GCAGC 2 cut(s) 254, 359
BshFI GGCC 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 361, 492
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 323
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 2 cut(s) 292, 584
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 426
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 287, 592
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 2 cut(s) 101, 142
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 2 cut(s) 292, 584
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 413
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 4 cut(s) 55, 106, 265, 385
BstKTI GATC 2 cut(s) 295, 587
BstMAI GTCTC 2 cut(s) 361, 492
BstMBI GATC 2 cut(s) 292, 584
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 254, 359
BstX2I RGATCY 2 cut(s) 292, 584
BstYI RGATCY 2 cut(s) 292, 584
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 4 cut(s) 55, 106, 265, 385
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
CciI TCATGA 1 cut(s) 640
Csp6I GTAC 1 cut(s) 383
CviAII CATG 5 cut(s) 209, 239, 386, 569, 641
CviJI RGCY 4 cut(s) 134, 323, 350, 437
CviKI_1 RGCY 4 cut(s) 134, 323, 350, 437
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 1 cut(s) 413
DpnI GATC 2 cut(s) 294, 586
DpnII GATC 2 cut(s) 292, 584
EaeI YGGCCR 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 603
Eco32I GATATC 2 cut(s) 74, 106
Eco57I CTGAAG 2 cut(s) 189, 561
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 2 cut(s) 74, 106
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 5 cut(s) 212, 242, 389, 572, 644
FatI CATG 5 cut(s) 208, 238, 385, 568, 640
FauNDI CATATG 3 cut(s) 43, 226, 530
Fnu4HI GCNGC 2 cut(s) 243, 348
FokI GGATG 4 cut(s) 42, 113, 252, 392
Fsp4HI GCNGC 2 cut(s) 243, 348
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 243, 348
HaeIII GGCC 1 cut(s) 323
Hin1II CATG 5 cut(s) 212, 242, 389, 572, 644
HinfI GANTC 3 cut(s) 50, 214, 260
HphI GGTGA 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 1 cut(s) 641
HpyAV CCTTC 3 cut(s) 137, 328, 536
HpyCH4V TGCA 3 cut(s) 41, 242, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 1 cut(s) 413
Hsp92II CATG 5 cut(s) 212, 242, 389, 572, 644
Kzo9I GATC 2 cut(s) 292, 584
LmnI GCTCC 2 cut(s) 146, 619
LpnPI CCDG 4 cut(s) 11, 38, 82, 123
Lsp1109I GCAGC 2 cut(s) 254, 359
LweI GCATC 2 cut(s) 154, 487
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 3 cut(s) 51, 211, 458
MalI GATC 2 cut(s) 294, 586
MboI GATC 2 cut(s) 292, 584
MboII GAAGA 4 cut(s) 164, 182, 206, 479
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 292, 584
MlsI TGGCCA 1 cut(s) 323
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 2 cut(s) 59, 208
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 5 cut(s) 117, 241, 279, 370, 606
Mox20I TGGCCA 1 cut(s) 323
Mph1103I ATGCAT 1 cut(s) 43
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 492
MslI CAYNNNNRTG 2 cut(s) 60, 449
Msp20I TGGCCA 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 532
NdeI CATATG 3 cut(s) 43, 226, 530
NdeII GATC 2 cut(s) 292, 584
NlaIII CATG 5 cut(s) 212, 242, 389, 572, 644
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 51, 211
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 1 cut(s) 242
PagI TCATGA 1 cut(s) 640
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 244, 349
PleI GAGTC 2 cut(s) 58, 208
PpsI GAGTC 2 cut(s) 58, 208
Psp6I CCWGG 1 cut(s) 24
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 292, 584
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 2 cut(s) 60, 449
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 2 cut(s) 243, 348
Sau3AI GATC 2 cut(s) 292, 584
SchI GAGTC 2 cut(s) 59, 208
ScrFI CCNGG 1 cut(s) 26
SetI ASST 6 cut(s) 27, 136, 332, 352, 439, 547
SfaNI GCATC 2 cut(s) 154, 487
SmiMI CAYNNNNRTG 2 cut(s) 60, 449
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 603
TatI WGTACW 1 cut(s) 382
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 51, 211
TseI GCWGC 2 cut(s) 242, 347
Tsp45I GTSAC 2 cut(s) 51, 211
TspDTI ATGAA 4 cut(s) 213, 216, 402, 629
TspRI CASTG 1 cut(s) 19
XapI RAATTY 4 cut(s) 30, 182, 338, 470
XceI RCATGY 1 cut(s) 242
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.