Rw0G016860
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0000244
Physical Location & Seq
Forward (+)
577983 .. 579306
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016860.1

Sequence Viewer

Length: 843 bp
ATGAGTAGACTTGGAGGAAATGAGATCAAAAACCAAAAACCAAATGTAAAGAATGAAGGAAAGAGCAAAGGAAAGGTCGAAGGCAATAACTATTTGCAGTGGAATTTAAATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATAAGTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTATGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGTATCCTCAACACAAATGATAAGCTTTGATGAAAACAGTGTATGGGAAGAATATGTGAAGGGTACTAAATTGAAATTAATCCTTAAAAGAGTCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTAGAAGGTGATGACCAAGCTTCAGAAGATATTCACATCATTGAAGACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAACAGTCTCTTCTAGTGAACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTAGGTACTTCCGTGGATAGAATGACTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAATCTTTCTAGAGAAGAACAGATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGACATAGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

280

Amino Acids

31.6

Weight (kDa)

5.11

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 52 - 111 2.5e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 7
AclWI GGATC 1 cut(s) 841
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 2 cut(s) 343, 649
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 5 cut(s) 185, 352, 539, 680, 778
AluBI AGCT 4 cut(s) 152, 276, 303, 515
AluI AGCT 4 cut(s) 152, 276, 303, 515
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 1 cut(s) 841
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 103
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AseI ATTAAT 1 cut(s) 356
Asp700I GAANNNNTTC 4 cut(s) 230, 525, 667, 687
AspLEI GCGC 1 cut(s) 740
AsuHPI GGTGA 2 cut(s) 515, 540
AsuII TTCGAA 1 cut(s) 444
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 139
BciVI GTATCC 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 2 cut(s) 600, 714
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 782
BmuI ACTGGG 1 cut(s) 782
BpiI GAAGAC 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 654
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 424, 788
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 444, 581
BseNI ACTGG 2 cut(s) 424, 788
BseRI GAGGAG 2 cut(s) 456, 600
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 356, 770
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 356, 770
Bsp119I TTCGAA 1 cut(s) 444
Bsp143I GATC 2 cut(s) 24, 833
BspCNI CTCAG 2 cut(s) 445, 580
BspPI GGATC 1 cut(s) 841
BspT104I TTCGAA 1 cut(s) 444
BsrI ACTGG 2 cut(s) 424, 788
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 2 cut(s) 24, 833
Bst4CI ACNGT 4 cut(s) 174, 212, 317, 592
Bst6I CTCTTC 2 cut(s) 601, 616
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 120, 736
BstDEI CTNAG 3 cut(s) 453, 567, 643
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 2 cut(s) 27, 836
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 2 cut(s) 24, 833
BstNSI RCATGY 1 cut(s) 738
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BsuI GTATCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 654
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 5 cut(s) 104, 322, 417, 450, 795
Cac8I GCNNGC 2 cut(s) 120, 736
CfoI GCGC 1 cut(s) 740
Csp6I GTAC 2 cut(s) 342, 648
CviAII CATG 4 cut(s) 222, 488, 735, 772
CviJI RGCY 8 cut(s) 128, 152, 261, 276, 303, 416, 449, 515
CviKI_1 RGCY 8 cut(s) 128, 152, 261, 276, 303, 416, 449, 515
CviQI GTAC 2 cut(s) 342, 648
DdeI CTNAG 3 cut(s) 453, 567, 643
DpnI GATC 2 cut(s) 26, 835
DpnII GATC 2 cut(s) 24, 833
DraI TTTAAA 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 601, 616
EarI CTCTTC 2 cut(s) 601, 616
Eco32I GATATC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 501
EcoRV GATATC 1 cut(s) 253
FaeI CATG 4 cut(s) 225, 491, 738, 775
FaqI GGGAC 2 cut(s) 356, 770
FatI CATG 4 cut(s) 221, 487, 734, 771
FauNDI CATATG 1 cut(s) 829
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 600, 714
GlaI GCGC 1 cut(s) 739
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 441
HhaI GCGC 1 cut(s) 740
Hin1II CATG 4 cut(s) 225, 491, 738, 775
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HindIII AAGCTT 2 cut(s) 301, 513
HinfI GANTC 2 cut(s) 369, 463
HphI GGTGA 2 cut(s) 515, 540
Hpy166II GTNNAC 2 cut(s) 8, 605
Hpy188I TCNGA 2 cut(s) 520, 570
Hpy188III TCNNGA 3 cut(s) 140, 256, 714
Hpy8I GTNNAC 2 cut(s) 8, 605
HpyAV CCTTC 5 cut(s) 50, 74, 331, 494, 772
HpyCH4III ACNGT 4 cut(s) 174, 212, 317, 592
HpyCH4V TGCA 3 cut(s) 97, 170, 839
HpyF3I CTNAG 3 cut(s) 453, 567, 643
Hsp92II CATG 4 cut(s) 225, 491, 738, 775
HspAI GCGC 1 cut(s) 738
Kzo9I GATC 2 cut(s) 24, 833
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 262, 405, 423, 483, 801
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 2 cut(s) 600, 714
MaeIII GTNAC 1 cut(s) 625
MalI GATC 2 cut(s) 26, 835
MboI GATC 2 cut(s) 24, 833
MboII GAAGA 8 cut(s) 338, 491, 533, 551, 588, 633, 692, 731
MflI RGATCY 1 cut(s) 833
MluCI AATT 6 cut(s) 103, 240, 347, 353, 376, 764
MlyI GAGTC 2 cut(s) 378, 457
MnlI CCTC 8 cut(s) 8, 136, 295, 418, 448, 477, 618, 621
MroXI GAANNNNTTC 4 cut(s) 230, 525, 667, 687
MseI TTAA 3 cut(s) 107, 356, 363
NdeI CATATG 1 cut(s) 829
NdeII GATC 2 cut(s) 24, 833
NlaIII CATG 4 cut(s) 225, 491, 738, 775
NspI RCATGY 1 cut(s) 738
NspV TTCGAA 1 cut(s) 444
PaeI GCATGC 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 4 cut(s) 230, 525, 667, 687
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 377, 457
PpsI GAGTC 2 cut(s) 377, 457
PshBI ATTAAT 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 833
RsaI GTAC 2 cut(s) 343, 649
RsaNI GTAC 2 cut(s) 342, 648
SaqAI TTAA 3 cut(s) 107, 356, 363
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 24, 833
SchI GAGTC 2 cut(s) 378, 457
SfuI TTCGAA 1 cut(s) 444
SmiI ATTTAAAT 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
SphI GCATGC 1 cut(s) 738
Sse9I AATT 6 cut(s) 103, 240, 347, 353, 376, 764
SspMI CTAG 2 cut(s) 600, 714
SwaI ATTTAAAT 1 cut(s) 108
TaaI ACNGT 4 cut(s) 174, 212, 317, 592
TaqI TCGA 3 cut(s) 78, 444, 492
TasI AATT 6 cut(s) 103, 240, 347, 353, 376, 764
Tru1I TTAA 3 cut(s) 107, 356, 363
Tru9I TTAA 3 cut(s) 107, 356, 363
TscAI CASTG 5 cut(s) 104, 322, 424, 457, 795
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 69, 324, 492, 597, 660, 812, 816
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 5 cut(s) 104, 322, 424, 457, 795
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 1 cut(s) 738
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 4 cut(s) 230, 525, 667, 687
XspI CTAG 2 cut(s) 600, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.