RLG00000017423
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000244
Physical Location & Seq
Reverse (-)
16510746 .. 16511778
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017423

Sequence Viewer

Length: 870 bp
ATGAGTAGACTTGGAGGAAATGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGCCGAAGGCAAGAACTATTTGCAGTGGAATTTAAATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACAAGGATTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACATGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCGTTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTGCAATCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTAAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAAGACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAACTGTCTCTTCTAGTGCACCTCCTCCAAAGAGAAAAGTTACAACTAAAGATGTCTTAGGTACTTCTGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACGACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATAATGGCAATACAAGATCTTTCTAGAGAAGAACAGATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTCCCAGTGGAAGTGAAAAAAGAGATGGTGTTGATGTTTATTTCATATGGATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

290

Amino Acids

32.23

Weight (kDa)

5.04

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AccI GTMKAC 1 cut(s) 7
AclWI GGATC 1 cut(s) 868
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 3 cut(s) 521, 662, 805
AhdI GACNNNNNGTC 1 cut(s) 687
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AluBI AGCT 5 cut(s) 185, 191, 203, 252, 329
AluI AGCT 5 cut(s) 185, 191, 203, 252, 329
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 2 cut(s) 321, 580
Alw44I GTGCAC 1 cut(s) 585
AlwI GGATC 1 cut(s) 868
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 2 cut(s) 75, 157
ApaLI GTGCAC 1 cut(s) 585
ApeKI GCWGC 2 cut(s) 203, 329
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 3 cut(s) 507, 649, 669
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 497, 522
AsuII TTCGAA 1 cut(s) 426
BaeGI GKGCMC 1 cut(s) 589
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 2 cut(s) 190, 316
BccI CCATC 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 321, 580
BfaI CTAG 2 cut(s) 582, 741
BfmI CTRYAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 733
BisI GCNGC 2 cut(s) 204, 330
BlsI GCNGC 2 cut(s) 205, 331
BmeRI GACNNNNNGTC 1 cut(s) 687
BmgT120I GGNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 809
BmsI GCATC 1 cut(s) 506
BmuI ACTGGG 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 406, 815
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 426, 563
BseNI ACTGG 2 cut(s) 406, 815
BseRI GAGGAG 2 cut(s) 438, 582
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 2 cut(s) 190, 316
BseYI CCCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 2 cut(s) 77, 159
BsiHKAI GWGCWC 1 cut(s) 589
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 321, 580
BsmFI GGGAC 1 cut(s) 797
BsnI GGCC 2 cut(s) 77, 159
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 2 cut(s) 733, 860
BspANI GGCC 2 cut(s) 77, 159
BspCNI CTCAG 2 cut(s) 427, 562
BspHI TCATGA 1 cut(s) 319
BspPI GGATC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 426
BsrI ACTGG 2 cut(s) 406, 815
BssMI GATC 2 cut(s) 733, 860
Bst4CI ACNGT 2 cut(s) 293, 574
Bst6I CTCTTC 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 120, 763
BstDEI CTNAG 3 cut(s) 435, 549, 625
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 2 cut(s) 736, 863
BstMAI GTCTC 2 cut(s) 321, 580
BstMBI GATC 2 cut(s) 733, 860
BstNSI RCATGY 1 cut(s) 765
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 190, 316
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 2 cut(s) 733, 860
BstYI RGATCY 2 cut(s) 733, 860
BsuRI GGCC 2 cut(s) 77, 159
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 5 cut(s) 104, 298, 399, 432, 822
Cac8I GCNNGC 2 cut(s) 120, 763
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 630
CviAII CATG 5 cut(s) 224, 320, 470, 762, 799
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 3 cut(s) 435, 549, 625
DpnI GATC 2 cut(s) 735, 862
DpnII GATC 2 cut(s) 733, 860
DraI TTTAAA 2 cut(s) 108, 346
DriI GACNNNNNGTC 1 cut(s) 687
Eam1104I CTCTTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 583
Eco32I GATATC 1 cut(s) 229
EcoRV GATATC 1 cut(s) 229
FaeI CATG 5 cut(s) 227, 323, 473, 765, 802
FaqI GGGAC 1 cut(s) 797
FatI CATG 5 cut(s) 223, 319, 469, 761, 798
FauNDI CATATG 1 cut(s) 856
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 204, 330
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 204, 330
FspBI CTAG 2 cut(s) 582, 741
GlaI GCGC 1 cut(s) 766
GluI GCNGC 2 cut(s) 204, 330
GsaI CCCAGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 2 cut(s) 77, 159
HhaI GCGC 1 cut(s) 767
Hin1II CATG 5 cut(s) 227, 323, 473, 765, 802
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HinfI GANTC 3 cut(s) 257, 351, 445
HphI GGTGA 2 cut(s) 497, 522
Hpy166II GTNNAC 2 cut(s) 8, 587
Hpy188I TCNGA 2 cut(s) 502, 552
Hpy188III TCNNGA 4 cut(s) 140, 232, 320, 741
Hpy8I GTNNAC 2 cut(s) 8, 587
HpyAV CCTTC 4 cut(s) 50, 74, 476, 799
HpyCH4III ACNGT 2 cut(s) 293, 574
HpyCH4V TGCA 5 cut(s) 97, 221, 332, 587, 866
HpyF3I CTNAG 3 cut(s) 435, 549, 625
Hsp92II CATG 5 cut(s) 227, 323, 473, 765, 802
HspAI GCGC 1 cut(s) 765
Kzo9I GATC 2 cut(s) 733, 860
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 238, 387, 405, 465, 828
Lsp1109I GCAGC 2 cut(s) 190, 316
LweI GCATC 1 cut(s) 506
MaeI CTAG 2 cut(s) 582, 741
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 735, 862
MboI GATC 2 cut(s) 733, 860
MboII GAAGA 7 cut(s) 314, 473, 515, 533, 570, 674, 758
MflI RGATCY 2 cut(s) 733, 860
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 3 cut(s) 103, 358, 791
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 9 cut(s) 8, 16, 136, 271, 400, 430, 459, 600, 603
MroXI GAANNNNTTC 3 cut(s) 507, 649, 669
MseI TTAA 2 cut(s) 107, 345
MspA1I CMGCKG 1 cut(s) 203
NdeI CATATG 1 cut(s) 856
NdeII GATC 2 cut(s) 733, 860
NlaIII CATG 5 cut(s) 227, 323, 473, 765, 802
NspI RCATGY 1 cut(s) 765
NspV TTCGAA 1 cut(s) 426
PaeI GCATGC 1 cut(s) 765
PagI TCATGA 1 cut(s) 319
PdmI GAANNNNTTC 3 cut(s) 507, 649, 669
PfeI GAWTC 2 cut(s) 257, 351
PkrI GCNGC 2 cut(s) 205, 331
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 2 cut(s) 733, 860
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
SaqAI TTAA 2 cut(s) 107, 345
SatI GCNGC 2 cut(s) 204, 330
Sau3AI GATC 2 cut(s) 733, 860
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 439
SduI GDGCHC 1 cut(s) 589
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 426
SmiI ATTTAAAT 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 765
Sse9I AATT 3 cut(s) 103, 358, 791
SspMI CTAG 2 cut(s) 582, 741
SwaI ATTTAAAT 1 cut(s) 108
TaaI ACNGT 2 cut(s) 293, 574
TaqI TCGA 2 cut(s) 426, 474
TasI AATT 3 cut(s) 103, 358, 791
TfiI GAWTC 2 cut(s) 257, 351
Tru1I TTAA 2 cut(s) 107, 345
Tru9I TTAA 2 cut(s) 107, 345
TscAI CASTG 5 cut(s) 104, 298, 406, 439, 822
TseI GCWGC 2 cut(s) 203, 329
TspDTI ATGAA 7 cut(s) 69, 300, 339, 474, 579, 642, 843
TspRI CASTG 5 cut(s) 104, 298, 406, 439, 822
VneI GTGCAC 1 cut(s) 585
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 740
XceI RCATGY 1 cut(s) 765
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 3 cut(s) 507, 649, 669
XspI CTAG 2 cut(s) 582, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.