Rorug06G0213600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000244
Physical Location & Seq
Reverse (-)
34027320 .. 34028222
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0213600.1

Sequence Viewer

Length: 903 bp
ATGACAAGAAGTTTCAAGAAAAAGTTAGGTGAAGGAGCTTTTGGGAGGGTTTTCAGTGGAAAGCTTCCGAATGGAGCTCCCGTGGCCATAAAAGTTCTCAAGGATTCTAAAGGAGATGGAGAAGATTTTGTTAATGAAGTGGGTACCATTGGCAGAATTCACCACATTAACGTAGTTCGCCTACTCGGGTTTTCTGCAGAAGGAGGCAAGCGTGCTATTATTTATGAGCTCATGCCAAATAGCTCTCTGGAGAGGTTCATCACAAATGAAAATAATGATAATTCATTTGATTGGAAGACACTTCACCATATTATGACTGGCATAGCGAAGGGAATTGACTATCTACACCAAGGGTGTGACCAGATGATCCTCCACCTTGATATCAAGCCTCACAATATCTTGTTGGACAATGATTTCAATCCAATTTCTGATTTTGGTCTGGCAAAACTCTGTTCCAAGGAACAAAGCGTCATATCCATGACTGCTACTAGAGGTACTGAGGGCTACATTGCACCCGAGCTGCAATCAAGGAACTTTAAAAATGTGTCCCACAAATCAGATGTATATAGTTTTGGGATTCTATTGCTTGAAATGGTTGGAGCTAGGAAGAAACCTGCTGATACCGCTGGTGATGTCGAGGTGTTTTTTCCTGAGTGGATTTATTATCGTTTAGTTCAAGGTGAAATTTTGGAATTGGAGGTATCTACCGAGGAAGATGCACAAATTGCTAAGAATTTACTAACTGTTGCACTTTGGTGCATCCAGTGGTACCCGGTGAATCGCCCTTCCATGAAAGCAGTTGTTAGAATGCTAGAAGGAGTCTCCGAAAGTTTGACAATGCCACCAAATCCATTCCCTTCGACAACTCAAACAGAACCCCTACAACAACATCAAGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

300

Amino Acids

33.58

Weight (kDa)

6.01

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 5 - 269 2.4e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 271 1.4e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 622
Acc65I GGTACC 2 cut(s) 143, 768
AccB1I GGYRCC 2 cut(s) 143, 768
AciI CCGC 1 cut(s) 624
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 3 cut(s) 156, 684, 733
AfaI GTAC 3 cut(s) 145, 496, 770
AgsI TTSAA 4 cut(s) 16, 418, 590, 677
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AleI CACNNNNGTG 1 cut(s) 754
AluBI AGCT 7 cut(s) 38, 64, 77, 229, 243, 520, 602
AluI AGCT 7 cut(s) 38, 64, 77, 229, 243, 520, 602
Alw21I GWGCWC 2 cut(s) 79, 231
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 2 cut(s) 185, 515
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 520
ApoI RAATTY 3 cut(s) 156, 684, 733
Asp718I GGTACC 2 cut(s) 143, 768
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 6 cut(s) 41, 152, 296, 641, 692, 787
AvaI CYCGRG 2 cut(s) 185, 515
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 2 cut(s) 143, 768
BanII GRGCYC 2 cut(s) 79, 231
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 2 cut(s) 79, 231
BbvI GCAGC 1 cut(s) 507
BccI CCATC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 826
BfaI CTAG 3 cut(s) 489, 603, 812
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 622
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 1 cut(s) 773
BmeT110I CYCGRG 2 cut(s) 185, 515
BmiI GGNNCC 2 cut(s) 145, 770
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 2 cut(s) 706, 768
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 4 cut(s) 81, 349, 456, 708
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bse1I ACTGG 2 cut(s) 322, 763
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 417
BseDI CCNNGG 4 cut(s) 81, 349, 456, 708
BseGI GGATG 1 cut(s) 759
BseJI GATNNNNATC 1 cut(s) 417
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 489, 642
BseNI ACTGG 2 cut(s) 322, 763
BseXI GCAGC 1 cut(s) 507
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 2 cut(s) 143, 768
BsiHKAI GWGCWC 2 cut(s) 79, 231
BsiHKCI CYCGRG 2 cut(s) 185, 515
BsiSI CCGG 1 cut(s) 773
BslFI GGGAC 1 cut(s) 532
BsmAI GTCTC 1 cut(s) 826
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 813
BsnI GGCC 1 cut(s) 86
BsoBI CYCGRG 2 cut(s) 185, 515
Bsp1286I GDGCHC 2 cut(s) 79, 231
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 1 cut(s) 624
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 490, 643
BspLI GGNNCC 2 cut(s) 145, 770
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 622
BspPI GGATC 1 cut(s) 361
BspT107I GGYRCC 2 cut(s) 143, 768
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 322, 763
BssECI CCNNGG 4 cut(s) 81, 349, 456, 708
BssMI GATC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 349, 456
Bst4CI ACNGT 1 cut(s) 745
BstAPI GCANNNNNTGC 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 209, 213
BstDEI CTNAG 3 cut(s) 498, 651, 729
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 759
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 3 cut(s) 83, 623, 725
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 61, 770
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 209, 213
CseI GACGC 1 cut(s) 457
Csp6I GTAC 3 cut(s) 144, 495, 769
CviAII CATG 3 cut(s) 232, 478, 790
CviQI GTAC 3 cut(s) 144, 495, 769
DdeI CTNAG 3 cut(s) 498, 651, 729
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 84
Ecl136II GAGCTC 2 cut(s) 77, 229
Eco130I CCWWGG 2 cut(s) 349, 456
Eco24I GRGCYC 2 cut(s) 79, 231
Eco32I GATATC 1 cut(s) 382
Eco53kI GAGCTC 2 cut(s) 77, 229
Eco88I CYCGRG 2 cut(s) 185, 515
EcoICRI GAGCTC 2 cut(s) 77, 229
EcoRI GAATTC 1 cut(s) 156
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 349, 456
EcoT38I GRGCYC 2 cut(s) 79, 231
ErhI CCWWGG 2 cut(s) 349, 456
FaeI CATG 3 cut(s) 235, 481, 793
FaqI GGGAC 1 cut(s) 532
FatI CATG 3 cut(s) 231, 477, 789
Fnu4HI GCNGC 1 cut(s) 521
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 2 cut(s) 79, 231
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 3 cut(s) 489, 603, 812
GluI GCNGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 773
HgaI GACGC 1 cut(s) 457
Hin1II CATG 3 cut(s) 235, 481, 793
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 4 cut(s) 104, 577, 778, 819
HpaI GTTAAC 1 cut(s) 898
HpaII CCGG 1 cut(s) 773
HphI GGTGA 6 cut(s) 41, 152, 296, 641, 692, 787
Hpy166II GTNNAC 1 cut(s) 898
Hpy188I TCNGA 4 cut(s) 69, 430, 559, 826
Hpy188III TCNNGA 3 cut(s) 16, 248, 650
Hpy8I GTNNAC 1 cut(s) 898
HpyAV CCTTC 6 cut(s) 26, 194, 322, 795, 809, 867
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 6 cut(s) 197, 512, 523, 719, 749, 759
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 623, 725
HpyF3I CTNAG 3 cut(s) 498, 651, 729
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 3 cut(s) 235, 481, 793
KpnI GGTACC 2 cut(s) 147, 772
KspAI GTTAAC 1 cut(s) 898
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 4 cut(s) 35, 74, 82, 599
LpnPI CCDG 9 cut(s) 233, 303, 374, 425, 612, 627, 663, 776, 786
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 2 cut(s) 706, 768
MaeI CTAG 3 cut(s) 489, 603, 812
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 4 cut(s) 134, 307, 619, 725
MhlI GDGCHC 2 cut(s) 79, 231
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 8 cut(s) 156, 280, 333, 423, 684, 692, 723, 733
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 828
MmeI TCCRAC 2 cut(s) 384, 577
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MseI TTAA 4 cut(s) 132, 168, 537, 897
MslI CAYNNNNRTG 2 cut(s) 476, 754
Msp20I TGGCCA 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 1 cut(s) 773
Mva1269I GAATGC 1 cut(s) 813
MwoI GCNNNNNNNGC 3 cut(s) 83, 623, 725
NciI CCSGG 1 cut(s) 773
NdeII GATC 1 cut(s) 366
NlaIII CATG 3 cut(s) 235, 481, 793
NlaIV GGNNCC 2 cut(s) 145, 770
NmuCI GTSAC 1 cut(s) 356
OliI CACNNNNGTG 1 cut(s) 754
PctI GAATGC 1 cut(s) 813
PfeI GAWTC 3 cut(s) 104, 577, 778
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 827
Psp124BI GAGCTC 2 cut(s) 79, 231
PspN4I GGNNCC 2 cut(s) 145, 770
PstI CTGCAG 1 cut(s) 199
RsaI GTAC 3 cut(s) 145, 496, 770
RsaNI GTAC 3 cut(s) 144, 495, 769
RseI CAYNNNNRTG 2 cut(s) 476, 754
SacI GAGCTC 2 cut(s) 79, 231
SaqAI TTAA 4 cut(s) 132, 168, 537, 897
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 1 cut(s) 366
SchI GAGTC 1 cut(s) 828
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 2 cut(s) 79, 231
SfaNI GCATC 2 cut(s) 706, 768
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 2 cut(s) 476, 754
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 8 cut(s) 156, 280, 333, 423, 684, 692, 723, 733
SsiI CCGC 1 cut(s) 624
SspMI CTAG 3 cut(s) 489, 603, 812
SstI GAGCTC 2 cut(s) 79, 231
StyD4I CCNGG 1 cut(s) 771
StyI CCWWGG 2 cut(s) 349, 456
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 636, 860
TasI AATT 8 cut(s) 156, 280, 333, 423, 684, 692, 723, 733
TfiI GAWTC 3 cut(s) 104, 577, 778
Tru1I TTAA 4 cut(s) 132, 168, 537, 897
Tru9I TTAA 4 cut(s) 132, 168, 537, 897
TscAI CASTG 2 cut(s) 61, 770
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 520
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 5 cut(s) 150, 247, 273, 282, 806
TspRI CASTG 2 cut(s) 61, 770
XapI RAATTY 3 cut(s) 156, 684, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XspI CTAG 3 cut(s) 489, 603, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.