Rorug02G0359000
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000244
Physical Location & Seq
Forward (+)
45412149 .. 45415055
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0359000.1

Sequence Viewer

Length: 1023 bp
ATGGCGGATTCTACTCCCCAGCCAAAGCCAAAGCCGCCACCAGACCCCTCTTCAGCCCACGCTTCTCGCCATTTCGGCGTCTCCGCCACCTCTTTTGCGCGCGCAAGCTCAGACTCGTCGCCTCTGTTTTCCTTCTCTGCTTCGTCGTTTTCCAAGGTACAAATCAAAACTCAAACCTCATTTTATTTATACTACAATTTCGGTTTTGATGAATCAAAAATCTTCAGGGGTGGTGGATACGCTGTTCTGATAAACGCATGGAAGCAAAGCTCTGCTTTGAAGCAATCGGTTGCTCACTATGCCACGTGTGATGGGGTTGCTTCTATTCATGTGGTGTGGTCTGATATTGATCCACCCTCGGAAACTTTGAAGTTTCGTCTTGAAAAGATGGTGTTTTCAAAGTCAAGAGCAGCTCAAAAACCTGACTTTAGGTTTGGGATGAGGCAGGATGAGGATTTGAACAATAGATTCAAGACGATTGAGGGGATGACAACTGATGCTGTGTTTTCGGTTGATGATGATGTGATTGTTTCGTGTGACACATTGGATTTTGCTTTCGGAGTTTGGCAGTCTGCGCCGAATGCTGTGGTTGGGTTCACTCCAAGAATGCATTGGCTTGATGAGAAGAAGAGTGGCGTGGCGAATTATTTGTATGGGGGATGGTGGTCAGTTTGGTGGATGGGGACATACAGCATGCTGCTTCCGAAAGCTGCATTCTTTCATAGGAAATACTTGGATTTGTATACTTACGATATGACCGCATCCATTCGTGATTATGTCACCAGGGAAAGAAACTGTGAAGATATTGCTATGTCATTGCTTGTTGCTAATGCCACCGGTGCACCTCCGATTTGGGTGAAAGGGAAGATGTACGAGCTTGGATCTTCAGGAATTAGCGGTCTGAAAAGGTACAGCAAGAGTCGCAACAAGTGCCTCAATGATCTCATCTCCCTCTTCAGAAGAATTCCCCTTGTACAAACTAACGTTAAAGCTGTCGATGCCAGGTTTGAATGGTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

340

Amino Acids

38.41

Weight (kDa)

9.07

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 80 - 331 1e-63 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 743
AccII CGCG 2 cut(s) 100, 102
AciI CCGC 5 cut(s) 5, 35, 84, 759, 897
AclI AACGTT 1 cut(s) 984
AclWI GGATC 2 cut(s) 344, 889
AcsI RAATTY 1 cut(s) 963
AcuI CTGAAG 4 cut(s) 36, 208, 870, 940
AcvI CACGTG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 159, 872, 911, 975
AflIII ACRYGT 1 cut(s) 305
AgeI ACCGGT 1 cut(s) 836
AgsI TTSAA 7 cut(s) 280, 370, 383, 399, 460, 472, 1010
AjnI CCWGG 2 cut(s) 782, 1001
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 6 cut(s) 108, 270, 413, 710, 877, 992
AluI AGCT 6 cut(s) 108, 270, 413, 710, 877, 992
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 1 cut(s) 85
Alw44I GTGCAC 1 cut(s) 840
AlwI GGATC 2 cut(s) 344, 889
ApaLI GTGCAC 1 cut(s) 840
ApeKI GCWGC 3 cut(s) 410, 697, 710
ApoI RAATTY 1 cut(s) 963
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AsiGI ACCGGT 1 cut(s) 836
AspLEI GCGC 4 cut(s) 100, 102, 104, 577
AsuHPI GGTGA 2 cut(s) 772, 868
BaeGI GKGCMC 1 cut(s) 844
BbrPI CACGTG 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 3 cut(s) 422, 684, 697
BccI CCATC 4 cut(s) 305, 382, 654, 673
BciT130I CCWGG 2 cut(s) 784, 1003
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 4 cut(s) 35, 411, 698, 711
BlsI GCNGC 4 cut(s) 36, 412, 699, 712
Bme1390I CCNGG 2 cut(s) 784, 1003
BmrFI CCNGG 2 cut(s) 784, 1003
BmsI GCATC 3 cut(s) 487, 770, 988
BsaAI YACGTR 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 153, 357, 783
BsaWI WCCGGW 1 cut(s) 836
Bse118I RCCGGY 1 cut(s) 836
Bse3DI GCAATG 1 cut(s) 815
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 2 cut(s) 784, 1003
BseDI CCNNGG 3 cut(s) 153, 357, 783
BseGI GGATG 6 cut(s) 444, 454, 492, 665, 684, 761
BseJI GATNNNNATC 1 cut(s) 348
BseMI GCAATG 1 cut(s) 815
BseMII CTCAG 1 cut(s) 123
BsePI GCGCGC 2 cut(s) 98, 100
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 3 cut(s) 422, 684, 697
BseYI CCCAGC 1 cut(s) 18
Bsh1236I CGCG 2 cut(s) 100, 102
BshTI ACCGGT 1 cut(s) 836
BsiHKAI GWGCWC 1 cut(s) 844
BsiSI CCGG 1 cut(s) 837
BslFI GGGAC 1 cut(s) 697
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 697
BsmI GAATGC 3 cut(s) 586, 612, 713
Bsp1286I GDGCHC 1 cut(s) 844
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 3 cut(s) 349, 881, 940
BspACI CCGC 5 cut(s) 5, 35, 84, 759, 897
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 2 cut(s) 100, 102
BspPI GGATC 2 cut(s) 344, 889
BsrDI GCAATG 1 cut(s) 815
BsrFI RCCGGY 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 973
BssAI RCCGGY 1 cut(s) 836
BssECI CCNNGG 3 cut(s) 153, 357, 783
BssHII GCGCGC 2 cut(s) 98, 100
BssMI GATC 3 cut(s) 349, 881, 940
BssNAI GTATAC 1 cut(s) 744
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 744
Bst2UI CCWGG 2 cut(s) 784, 1003
Bst4CI ACNGT 1 cut(s) 797
Bst6I CTCTTC 3 cut(s) 55, 623, 959
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 930
BstAUI TGTACA 1 cut(s) 973
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 4 cut(s) 100, 102, 106, 695
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 6 cut(s) 444, 454, 492, 665, 684, 761
BstFNI CGCG 2 cut(s) 100, 102
BstHHI GCGC 4 cut(s) 100, 102, 104, 577
BstKTI GATC 3 cut(s) 352, 884, 943
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 3 cut(s) 349, 881, 940
BstMWI GCNNNNNNNGC 9 cut(s) 34, 75, 299, 574, 581, 839, 921, 930, 998
BstNI CCWGG 2 cut(s) 784, 1003
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 2 cut(s) 782, 1001
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 2 cut(s) 100, 102
BstV1I GCAGC 3 cut(s) 422, 684, 697
BstX2I RGATCY 1 cut(s) 881
BstYI RGATCY 1 cut(s) 881
BstZ17I GTATAC 1 cut(s) 744
BsuI GTATCC 1 cut(s) 230
BtsCI GGATG 6 cut(s) 444, 454, 492, 665, 684, 761
Cac8I GCNNGC 4 cut(s) 100, 102, 106, 695
CfoI GCGC 4 cut(s) 100, 102, 104, 577
Cfr10I RCCGGY 1 cut(s) 836
CseI GACGC 1 cut(s) 67
Csp6I GTAC 4 cut(s) 158, 871, 910, 974
CspAI ACCGGT 1 cut(s) 836
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 258, 329, 694
CviQI GTAC 4 cut(s) 158, 871, 910, 974
DdeI CTNAG 1 cut(s) 109
DpnI GATC 3 cut(s) 351, 883, 942
DpnII GATC 3 cut(s) 349, 881, 940
Eam1104I CTCTTC 3 cut(s) 55, 623, 959
EarI CTCTTC 3 cut(s) 55, 623, 959
EciI GGCGGA 2 cut(s) 20, 73
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 4 cut(s) 36, 208, 870, 940
Eco72I CACGTG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 963
EcoRII CCWGG 2 cut(s) 782, 1001
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 3 cut(s) 261, 332, 697
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 1 cut(s) 697
FatI CATG 3 cut(s) 257, 328, 693
FblI GTMKAC 1 cut(s) 743
Fnu4HI GCNGC 4 cut(s) 35, 411, 698, 711
FokI GGATG 6 cut(s) 451, 461, 499, 672, 691, 748
Fsp4HI GCNGC 4 cut(s) 35, 411, 698, 711
GlaI GCGC 4 cut(s) 99, 101, 103, 576
GluI GCNGC 4 cut(s) 35, 411, 698, 711
GsaI CCCAGC 1 cut(s) 22
HapII CCGG 1 cut(s) 837
HgaI GACGC 1 cut(s) 67
HhaI GCGC 4 cut(s) 100, 102, 104, 577
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 261, 332, 697
Hin6I GCGC 4 cut(s) 98, 100, 102, 575
HinP1I GCGC 4 cut(s) 98, 100, 102, 575
HinfI GANTC 5 cut(s) 8, 113, 212, 468, 919
HpaII CCGG 1 cut(s) 837
HphI GGTGA 2 cut(s) 772, 868
Hpy166II GTNNAC 3 cut(s) 597, 744, 842
Hpy188I TCNGA 9 cut(s) 112, 249, 343, 361, 560, 705, 849, 903, 959
Hpy188III TCNNGA 5 cut(s) 380, 405, 472, 770, 888
Hpy8I GTNNAC 3 cut(s) 597, 744, 842
Hpy99I CGWCG 2 cut(s) 121, 148
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 2 cut(s) 305, 984
HpyCH4V TGCA 3 cut(s) 610, 713, 842
HpyF10VI GCNNNNNNNGC 9 cut(s) 34, 75, 299, 574, 581, 839, 921, 930, 998
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 2 cut(s) 305, 984
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 261, 332, 697
HspAI GCGC 4 cut(s) 98, 100, 102, 575
Kzo9I GATC 3 cut(s) 349, 881, 940
Lsp1109I GCAGC 3 cut(s) 422, 684, 697
LweI GCATC 3 cut(s) 487, 770, 988
MaeII ACGT 2 cut(s) 305, 984
MaeIII GTNAC 2 cut(s) 536, 778
MalI GATC 3 cut(s) 351, 883, 942
MboI GATC 3 cut(s) 349, 881, 940
MboII GAAGA 9 cut(s) 42, 214, 637, 640, 812, 876, 877, 946, 972
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 1 cut(s) 844
MluCI AATT 4 cut(s) 196, 643, 891, 963
MlyI GAGTC 2 cut(s) 107, 928
Mph1103I ATGCAT 1 cut(s) 612
MseI TTAA 1 cut(s) 987
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 2 cut(s) 784, 1003
Mva1269I GAATGC 3 cut(s) 586, 612, 713
MvaI CCWGG 2 cut(s) 784, 1003
MvnI CGCG 2 cut(s) 100, 102
MwoI GCNNNNNNNGC 9 cut(s) 34, 75, 299, 574, 581, 839, 921, 930, 998
NdeII GATC 3 cut(s) 349, 881, 940
NlaIII CATG 3 cut(s) 261, 332, 697
NmuCI GTSAC 2 cut(s) 536, 778
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 1 cut(s) 697
PaeI GCATGC 1 cut(s) 697
PauI GCGCGC 2 cut(s) 98, 100
PctI GAATGC 3 cut(s) 586, 612, 713
PfeI GAWTC 3 cut(s) 8, 212, 468
PinAI ACCGGT 1 cut(s) 836
PkrI GCNGC 4 cut(s) 36, 412, 699, 712
PleI GAGTC 2 cut(s) 107, 927
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 2 cut(s) 107, 927
Ppu21I YACGTR 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 984
Psp6I CCWGG 2 cut(s) 782, 1001
PspCI CACGTG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 2 cut(s) 782, 1001
PsuI RGATCY 1 cut(s) 881
PteI GCGCGC 2 cut(s) 98, 100
RsaI GTAC 4 cut(s) 159, 872, 911, 975
RsaNI GTAC 4 cut(s) 158, 871, 910, 974
SaqAI TTAA 1 cut(s) 987
SatI GCNGC 4 cut(s) 35, 411, 698, 711
Sau3AI GATC 3 cut(s) 349, 881, 940
SchI GAGTC 2 cut(s) 107, 928
ScrFI CCNGG 2 cut(s) 784, 1003
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 3 cut(s) 487, 770, 988
SgrAI CRCCGGYG 1 cut(s) 836
SphI GCATGC 1 cut(s) 697
Sse9I AATT 4 cut(s) 196, 643, 891, 963
SsiI CCGC 5 cut(s) 5, 35, 84, 759, 897
StyD4I CCNGG 2 cut(s) 782, 1001
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 2 cut(s) 308, 987
TaqI TCGA 1 cut(s) 996
TasI AATT 4 cut(s) 196, 643, 891, 963
TatI WGTACW 1 cut(s) 973
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 3 cut(s) 8, 212, 468
Tru1I TTAA 1 cut(s) 987
Tru9I TTAA 1 cut(s) 987
TseFI GTSAC 2 cut(s) 536, 778
TseI GCWGC 3 cut(s) 410, 697, 710
Tsp45I GTSAC 2 cut(s) 536, 778
TspDTI ATGAA 3 cut(s) 225, 317, 710
VneI GTGCAC 1 cut(s) 840
XapI RAATTY 1 cut(s) 963
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.