Rroxscaffold_5G00350240
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000244
Physical Location & Seq
Reverse (-)
23989020 .. 23995039
6020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350240.1

Sequence Viewer

Length: 402 bp
ATGAAGAGTAAGGGCAAGGAAAAATCCCAAAGTCTTGTACCTATGTCCAATTTCAACTTAAAGGGCAAGGTCAAAGGAACAAGTATGTCTAGGGCATATCTCTCCTGGAACAAAGAAACGGATGATGTACTTGCTAAAGTACTTTATGATCAAATGAACGCAGGACACAAGACTGATGGAGATTGGAAACCACAGGCTTATCAAGCAGTAGTGGATAAGTTGAATGCTACATGGCAATTTGATCTGACAAAACTTAATGTCAAGAATAGACCCAAGACTTGGAAGAGACATTATGCTATTATCACCAACATTAGAAGTCAAAGTGGGCTTGTTTGGGATGAAGAGAAAAAAGATGGTTCCAATCACTGCAGAAAACCTAGAAATTTGGAATGCTTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

133

Amino Acids

15.38

Weight (kDa)

9.75

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 35 - 117 5.2e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 279
AcsI RAATTY 1 cut(s) 382
AfaI GTAC 3 cut(s) 39, 129, 141
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 2 cut(s) 55, 223
AjnI CCWGG 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 295
BccI CCATC 2 cut(s) 170, 347
BciT130I CCWGG 1 cut(s) 106
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 90, 378
BfmI CTRYAG 1 cut(s) 367
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 106
BseGI GGATG 2 cut(s) 127, 343
BseLI CCNNNNNNNGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 280
BsmI GAATGC 2 cut(s) 229, 395
Bsp143I GATC 2 cut(s) 148, 241
BspLI GGNNCC 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 371
BssMI GATC 2 cut(s) 148, 241
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 278, 336
BstF5I GGATG 2 cut(s) 127, 343
BstKTI GATC 2 cut(s) 151, 244
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 2 cut(s) 148, 241
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 127, 343
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Csp6I GTAC 3 cut(s) 38, 128, 140
CviAII CATG 1 cut(s) 231
CviJI RGCY 2 cut(s) 197, 328
CviKI_1 RGCY 2 cut(s) 197, 328
CviQI GTAC 3 cut(s) 38, 128, 140
DpnI GATC 2 cut(s) 150, 243
DpnII GATC 2 cut(s) 148, 241
Eam1104I CTCTTC 2 cut(s) 278, 336
EarI CTCTTC 2 cut(s) 278, 336
EcoRII CCWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 234
FaiI YATR 6 cut(s) 44, 86, 97, 147, 232, 294
FatI CATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 148
FokI GGATG 2 cut(s) 134, 350
FspBI CTAG 2 cut(s) 90, 378
Hin1II CATG 1 cut(s) 234
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 148, 241
LpnPI CCDG 4 cut(s) 91, 118, 147, 179
MaeI CTAG 2 cut(s) 90, 378
MalI GATC 2 cut(s) 150, 243
MboI GATC 2 cut(s) 148, 241
MboII GAAGA 3 cut(s) 16, 295, 353
MluCI AATT 3 cut(s) 49, 236, 382
MseI TTAA 2 cut(s) 59, 255
MspR9I CCNGG 1 cut(s) 106
Mva1269I GAATGC 2 cut(s) 229, 395
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 2 cut(s) 148, 241
NlaIII CATG 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 358
PctI GAATGC 2 cut(s) 229, 395
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 358
PstI CTGCAG 1 cut(s) 371
RsaI GTAC 3 cut(s) 39, 129, 141
RsaNI GTAC 3 cut(s) 38, 128, 140
SaqAI TTAA 2 cut(s) 59, 255
Sau3AI GATC 2 cut(s) 148, 241
ScaI AGTACT 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 106
SetI ASST 3 cut(s) 43, 72, 379
SfcI CTRYAG 1 cut(s) 367
Sse9I AATT 3 cut(s) 49, 236, 382
SspMI CTAG 2 cut(s) 90, 378
StyD4I CCNGG 1 cut(s) 104
TasI AATT 3 cut(s) 49, 236, 382
TatI WGTACW 2 cut(s) 127, 139
Tru1I TTAA 2 cut(s) 59, 255
Tru9I TTAA 2 cut(s) 59, 255
TscAI CASTG 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 17, 170, 354
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 279
XapI RAATTY 1 cut(s) 382
XspI CTAG 2 cut(s) 90, 378
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.