Rw6G017100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000244
Physical Location & Seq
Forward (+)
33899815 .. 33902334
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017100.1

Sequence Viewer

Length: 891 bp
ATGAGTAGACTTGGAGGAAATGAGATAAAAAACCGAAAACCAAATGGAAAGAGCAAAGGAAAGGCCGAAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAATTTGATATTCACCTAAGTGCTAACAATATAAAAAACTGTGTGAAATCATGGAAAAAGTTATATGGATTTGTTAGTGATATCTTGAGCCAATGTGGATTTAGCTGGGTATCCTTAACACAAATGATAAGCGTTGATGAAAACAGTATATGGGAAGAATATGTGAAGGGTACTAAACTGAAATTAATCCTTAAAAGAATCCCAAATTGGGATGATATAGTTCATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTACTAATGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAAGACATTTCACCGAACCAAGCAAGTTCTCAGAAAAAGAGAAATGAAGCAACAGTCTCTTCTAGTGCACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTAGGTACTTCCATGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATAATGGCAATACAAGATCTTTCTAGAGAAGAACAGATAAAAGCATGCGCTTGGTTTATAGAGAACGATAAACAATTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGACATGACACACATATTTTCCAAATTCAATTTATTAATGCTATTTTTTTGGATGAAATTAATCAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

296

Amino Acids

33.34

Weight (kDa)

6.13

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 25 - 101 9.9e-07 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccI GTMKAC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 842
AfaI GTAC 2 cut(s) 313, 619
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 4 cut(s) 509, 650, 793, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AleI CACNNNNGTG 1 cut(s) 159
AluBI AGCT 4 cut(s) 104, 110, 122, 246
AluI AGCT 4 cut(s) 104, 110, 122, 246
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 1 cut(s) 568
Alw44I GTGCAC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 2 cut(s) 63, 76
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 842
AseI ATTAAT 3 cut(s) 326, 854, 878
Asp700I GAANNNNTTC 3 cut(s) 495, 637, 657
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 3 cut(s) 146, 485, 510
AsuII TTCGAA 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 109
BciVI GTATCC 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 568
BfaI CTAG 2 cut(s) 570, 729
BfmI CTRYAG 1 cut(s) 105
BfuI GTATCC 1 cut(s) 262
BglII AGATCT 1 cut(s) 721
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 797
BmsI GCATC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 797
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 624
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 394, 803
BseDI CCNNGG 1 cut(s) 624
BseGI GGATG 2 cut(s) 358, 876
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 414, 551
BseNI ACTGG 2 cut(s) 394, 803
BseRI GAGGAG 2 cut(s) 426, 570
BseSI GKGCMC 1 cut(s) 577
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 246
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 2 cut(s) 65, 78
BsiHKAI GWGCWC 1 cut(s) 577
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 785
BsnI GGCC 2 cut(s) 65, 78
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 1 cut(s) 721
Bsp19I CCATGG 1 cut(s) 624
BspANI GGCC 2 cut(s) 65, 78
BspCNI CTCAG 2 cut(s) 415, 550
BspT104I TTCGAA 1 cut(s) 414
BsrI ACTGG 2 cut(s) 394, 803
BssECI CCNNGG 1 cut(s) 624
BssMI GATC 1 cut(s) 721
BssT1I CCWWGG 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 182, 287, 562
Bst6I CTCTTC 2 cut(s) 571, 586
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 4 cut(s) 158, 423, 537, 613
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 2 cut(s) 358, 876
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 1 cut(s) 724
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 1 cut(s) 721
BstNSI RCATGY 1 cut(s) 753
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 65, 78
BtgI CCRYGG 1 cut(s) 624
BtsCI GGATG 2 cut(s) 358, 876
BtsIMutI CAGTG 3 cut(s) 387, 420, 810
Cac8I GCNNGC 1 cut(s) 751
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 312, 618
CviAII CATG 6 cut(s) 192, 458, 625, 750, 787, 823
CviQI GTAC 2 cut(s) 312, 618
DdeI CTNAG 4 cut(s) 158, 423, 537, 613
DpnI GATC 1 cut(s) 723
DpnII GATC 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 571, 586
EarI CTCTTC 2 cut(s) 571, 586
Eco130I CCWWGG 1 cut(s) 624
Eco32I GATATC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 6 cut(s) 195, 461, 628, 753, 790, 826
FaqI GGGAC 1 cut(s) 785
FatI CATG 6 cut(s) 191, 457, 624, 749, 786, 822
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 365, 883
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 570, 729
GlaI GCGC 1 cut(s) 754
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 65, 78
HhaI GCGC 1 cut(s) 755
Hin1II CATG 6 cut(s) 195, 461, 628, 753, 790, 826
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HinfI GANTC 2 cut(s) 339, 433
HphI GGTGA 3 cut(s) 146, 485, 510
Hpy166II GTNNAC 2 cut(s) 8, 575
Hpy188I TCNGA 2 cut(s) 490, 540
Hpy188III TCNNGA 2 cut(s) 226, 729
Hpy8I GTNNAC 2 cut(s) 8, 575
HpyAV CCTTC 4 cut(s) 62, 301, 464, 787
HpyCH4III ACNGT 3 cut(s) 182, 287, 562
HpyCH4V TGCA 2 cut(s) 140, 575
HpyF3I CTNAG 4 cut(s) 158, 423, 537, 613
Hsp92II CATG 6 cut(s) 195, 461, 628, 753, 790, 826
HspAI GCGC 1 cut(s) 753
Kzo9I GATC 1 cut(s) 721
LpnPI CCDG 5 cut(s) 59, 232, 375, 393, 816
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 1 cut(s) 494
MaeI CTAG 2 cut(s) 570, 729
MaeIII GTNAC 1 cut(s) 595
MalI GATC 1 cut(s) 723
MboI GATC 1 cut(s) 721
MboII GAAGA 8 cut(s) 308, 461, 503, 521, 558, 603, 662, 746
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 7 cut(s) 143, 323, 346, 779, 842, 847, 875
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 6 cut(s) 8, 388, 418, 447, 588, 591
MroXI GAANNNNTTC 3 cut(s) 495, 637, 657
MseI TTAA 5 cut(s) 257, 326, 333, 854, 878
MslI CAYNNNNRTG 2 cut(s) 159, 369
MspA1I CMGCKG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 624
NdeII GATC 1 cut(s) 721
NlaIII CATG 6 cut(s) 195, 461, 628, 753, 790, 826
NspI RCATGY 1 cut(s) 753
NspV TTCGAA 1 cut(s) 414
OliI CACNNNNGTG 1 cut(s) 159
PaeI GCATGC 1 cut(s) 753
PdmI GAANNNNTTC 3 cut(s) 495, 637, 657
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PshBI ATTAAT 3 cut(s) 326, 854, 878
PsiI TTATAA 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 721
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 313, 619
RsaNI GTAC 2 cut(s) 312, 618
RseI CAYNNNNRTG 2 cut(s) 159, 369
SaqAI TTAA 5 cut(s) 257, 326, 333, 854, 878
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 721
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 427
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 1 cut(s) 494
SfcI CTRYAG 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 414
SmiMI CAYNNNNRTG 2 cut(s) 159, 369
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SphI GCATGC 1 cut(s) 753
Sse9I AATT 7 cut(s) 143, 323, 346, 779, 842, 847, 875
SspI AATATT 1 cut(s) 886
SspMI CTAG 2 cut(s) 570, 729
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 3 cut(s) 182, 287, 562
TaqI TCGA 2 cut(s) 414, 462
TasI AATT 7 cut(s) 143, 323, 346, 779, 842, 847, 875
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 5 cut(s) 257, 326, 333, 854, 878
Tru9I TTAA 5 cut(s) 257, 326, 333, 854, 878
TscAI CASTG 3 cut(s) 394, 427, 810
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 7 cut(s) 294, 353, 462, 567, 630, 827, 887
TspRI CASTG 3 cut(s) 394, 427, 810
VneI GTGCAC 1 cut(s) 573
VspI ATTAAT 3 cut(s) 326, 854, 878
XapI RAATTY 1 cut(s) 842
XbaI TCTAGA 1 cut(s) 728
XceI RCATGY 1 cut(s) 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 3 cut(s) 495, 637, 657
XspI CTAG 2 cut(s) 570, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.