RchiOBHm_Chr3g0485151
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000244
Physical Location & Seq
Reverse (-)
31713206 .. 31713655
450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44979

Sequence Viewer

Length: 360 bp
ATGATAAGCGTTGATGAAAACAGTGTATGGGAAGAATCTGTGAAGTCTCATGATGAAGTTGCAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTAAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTGCTAATGAAGATAATCATGTCGATTTGGAAGTTGATGACCAAGCATCAGAAGATATTCACATCATTGAAGACATTTCACCAAACCAAGCAAGTTCTCAAAAAAAGAGAAATGAAGCAACAGTCTCTTCTAGTGCACCTCCTCCAAAGAGAAGATGTCTTAGGTACTTCCGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

4.74

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 2 cut(s) 51, 310
Alw44I GTGCAC 1 cut(s) 315
ApaLI GTGCAC 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 252
AsuII TTCGAA 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 319
BaeI ACNNNNGTAYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 51, 310
BfaI CTAG 1 cut(s) 312
BmsI GCATC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 2 cut(s) 168, 312
BseSI GKGCMC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 51, 310
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 23, 304
Bst6I CTCTTC 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 165, 341
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 51, 310
BstSLI GKGCMC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 28, 129, 162
Cac8I GCNNGC 1 cut(s) 64
CciI TCATGA 1 cut(s) 49
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 50, 200
CviJI RGCY 3 cut(s) 66, 128, 161
CviKI_1 RGCY 3 cut(s) 66, 128, 161
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 165, 341
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
FaeI CATG 2 cut(s) 53, 203
FaiI YATR 5 cut(s) 28, 51, 101, 173, 201
FatI CATG 2 cut(s) 49, 199
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 153
Hin1II CATG 2 cut(s) 53, 203
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 3 cut(s) 35, 81, 175
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 317
HpyCH4III ACNGT 2 cut(s) 23, 304
HpyCH4V TGCA 2 cut(s) 62, 317
HpyF3I CTNAG 2 cut(s) 165, 341
Hsp92II CATG 2 cut(s) 53, 203
LpnPI CCDG 3 cut(s) 117, 135, 195
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 312
MboII GAAGA 6 cut(s) 44, 203, 245, 263, 300, 345
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 1 cut(s) 88
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 5 cut(s) 130, 160, 189, 330, 333
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 1 cut(s) 75
NlaIII CATG 2 cut(s) 53, 203
NspV TTCGAA 1 cut(s) 156
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 35, 81
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 75
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 1 cut(s) 319
SetI ASST 5 cut(s) 68, 154, 171, 322, 347
SfaNI GCATC 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 156
Sse9I AATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 23, 304
TaqI TCGA 2 cut(s) 156, 204
TasI AATT 1 cut(s) 88
TfiI GAWTC 2 cut(s) 35, 81
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 28, 136, 169
TspDTI ATGAA 4 cut(s) 30, 69, 204, 309
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 3 cut(s) 28, 136, 169
VneI GTGCAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.