Prupe.3G281200_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000244
Physical Location & Seq
Reverse (-)
25647089 .. 25649567
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G281200.1

Sequence Viewer

Length: 921 bp
ATGGATCATTATGACCTCCATAGGCAGAGAAGGGATTTGAAGCACAAAGGAAGGAACGTTGTTTGGTCACTTGCAATGGATAAGTGTTTAATTGATGCCCTTGCTGTTCAAGCTAGAAACGGAAACAAAATTGACAAGTGCTTTAATGAAAATGCCTACACTGCTGCTTGTATTGCTGTGAACTCTCGTTTTAACTTAAATTTAAACAATCAAAAAGTCATTAATCGTCTTAAGACCATAAAGAAGAGGTATAAGGCAATGAAGGATATGCTTAGTCAAGATGGTTTCAGGTGGAATCCGAGTACAAAGATGATTGAGTGTGACAATGAAGAGCTTTGGAAGAGATACATCGCAGCACACCCTGACGCAAGAGGGATTCAAGGGAAGCAGATAGAGATGTATGATGAACTAAAAATTGTATGTGGAAATTATCAAGCCCCTAGTCGCTGGGCTAAGATGAAGGATGGAGGCCATCCAAGTGACATGAAGAATTGTGAAGATGATTCTGCCTCATTTCTTTCTCCAAGCTCCGATGACCTAAGTGAGACAGATGGAACAGAGTCATATAGTGGACCAGATGAGTATACCAAGATGCCAGATGGTAGTCAAGACCCCCCTCTGATCCAGCCCCTTAGACAACTTCCAAAACGCCCTCGTGGCTCAGAAGCCCTTCAGGATGCAATGATGGCTGTGGCATCAAGCATTCGTCGCTTGGCTGATGCAATGGAGCAAAGCAAATACTCTATTGATGCCTCTGAACTACTACAGGCTGTGATGGAAATTGATGGTTTGGAAGAGGCAAGGCAGATGTATGCATTTGAGTATTTGAATGCTGACCCAGTCAAAGCTCGAGCTTTCATGGCATACAATGCTCAAATGAGAAAATTATACTTATTTAGACAGTTCTGGTGGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

307

Amino Acids

35.32

Weight (kDa)

8.09

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 584
AclI AACGTT 1 cut(s) 57
AclWI GGATC 2 cut(s) 12, 616
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 656
AfaI GTAC 1 cut(s) 304
AflII CTTAAG 1 cut(s) 230
AgsI TTSAA 4 cut(s) 40, 110, 380, 829
AluBI AGCT 5 cut(s) 113, 334, 528, 848, 854
AluI AGCT 5 cut(s) 113, 334, 528, 848, 854
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 2 cut(s) 12, 616
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 164, 353
ApoI RAATTY 1 cut(s) 199
AseI ATTAAT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 669
AspS9I GGNCC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 1 cut(s) 572
BauI CACGAG 1 cut(s) 654
BbvI GCAGC 2 cut(s) 151, 365
BccI CCATC 8 cut(s) 275, 458, 480, 545, 593, 679, 769, 779
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 2 cut(s) 114, 441
BfmI CTRYAG 1 cut(s) 764
BfrI CTTAAG 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 657
BisI GCNGC 2 cut(s) 165, 354
BlsI GCNGC 2 cut(s) 166, 355
Bme18I GGWCC 1 cut(s) 572
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 1 cut(s) 572
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 6 cut(s) 85, 582, 667, 704, 709, 739
BmuI ACTGGG 1 cut(s) 833
Bse1I ACTGG 1 cut(s) 839
Bse3DI GCAATG 4 cut(s) 81, 264, 687, 729
BseGI GGATG 3 cut(s) 469, 472, 682
BseMI GCAATG 4 cut(s) 81, 264, 687, 729
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 839
BseXI GCAGC 2 cut(s) 151, 365
BseYI CCCAGC 1 cut(s) 447
BshFI GGCC 1 cut(s) 471
BsiHKCI CYCGRG 1 cut(s) 849
BsmAI GTCTC 1 cut(s) 539
BsmI GAATGC 2 cut(s) 702, 835
BsnI GGCC 1 cut(s) 471
BsoBI CYCGRG 1 cut(s) 849
Bsp143I GATC 2 cut(s) 4, 621
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 674
BspPI GGATC 2 cut(s) 12, 616
BspQI GCTCTTC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 230
BsrDI GCAATG 4 cut(s) 81, 264, 687, 729
BsrI ACTGG 1 cut(s) 839
BssMI GATC 2 cut(s) 4, 621
BssNAI GTATAC 1 cut(s) 585
BssSI CACGAG 1 cut(s) 654
Bst1107I GTATAC 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 903
Bst6I CTCTTC 4 cut(s) 239, 324, 335, 789
BstAFI CTTAAG 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 869
BstDEI CTNAG 5 cut(s) 272, 453, 539, 632, 661
BstF5I GGATG 3 cut(s) 469, 472, 682
BstKTI GATC 2 cut(s) 7, 624
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 2 cut(s) 4, 621
BstMWI GCNNNNNNNGC 8 cut(s) 110, 161, 173, 657, 686, 708, 860, 869
BstSFI CTRYAG 1 cut(s) 764
BstV1I GCAGC 2 cut(s) 151, 365
BstZ17I GTATAC 1 cut(s) 585
BsuRI GGCC 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 3 cut(s) 469, 472, 682
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 572
CseI GACGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 484, 859
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 5 cut(s) 272, 453, 539, 632, 661
DpnI GATC 2 cut(s) 6, 623
DpnII GATC 2 cut(s) 4, 621
DraI TTTAAA 1 cut(s) 204
Eam1104I CTCTTC 4 cut(s) 239, 324, 335, 789
EarI CTCTTC 4 cut(s) 239, 324, 335, 789
Eco47I GGWCC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 656
Eco88I CYCGRG 1 cut(s) 849
EcoT22I ATGCAT 1 cut(s) 817
FaeI CATG 2 cut(s) 487, 862
FatI CATG 2 cut(s) 483, 858
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 2 cut(s) 165, 354
FokI GGATG 3 cut(s) 459, 476, 689
Fsp4HI GCNGC 2 cut(s) 165, 354
FspBI CTAG 2 cut(s) 114, 441
GluI GCNGC 2 cut(s) 165, 354
GsaI CCCAGC 1 cut(s) 451
HaeIII GGCC 1 cut(s) 471
HgaI GACGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 487, 862
HinfI GANTC 4 cut(s) 295, 376, 503, 560
Hpy166II GTNNAC 3 cut(s) 181, 572, 585
Hpy188I TCNGA 5 cut(s) 300, 532, 621, 664, 757
Hpy188III TCNNGA 3 cut(s) 278, 608, 674
Hpy8I GTNNAC 3 cut(s) 181, 572, 585
Hpy99I CGWCG 1 cut(s) 711
HpyAV CCTTC 5 cut(s) 24, 45, 256, 454, 680
HpyCH4III ACNGT 1 cut(s) 903
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 74, 680, 722, 815
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 161, 173, 657, 686, 708, 860, 869
HpyF3I CTNAG 5 cut(s) 272, 453, 539, 632, 661
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 487, 862
Kzo9I GATC 2 cut(s) 4, 621
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 533, 727
Lsp1109I GCAGC 2 cut(s) 151, 365
LweI GCATC 6 cut(s) 85, 582, 667, 704, 709, 739
MaeI CTAG 2 cut(s) 114, 441
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 66, 320, 479
MalI GATC 2 cut(s) 6, 623
MboI GATC 2 cut(s) 4, 621
MboII GAAGA 6 cut(s) 256, 341, 352, 499, 509, 806
MluCI AATT 8 cut(s) 90, 129, 199, 414, 427, 490, 780, 884
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 9 cut(s) 26, 240, 365, 461, 520, 627, 663, 763, 790
Mph1103I ATGCAT 1 cut(s) 817
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 7 cut(s) 89, 144, 192, 197, 203, 222, 231
MslI CAYNNNNRTG 1 cut(s) 477
MspCI CTTAAG 1 cut(s) 230
Mva1269I GAATGC 2 cut(s) 702, 835
MwoI GCNNNNNNNGC 8 cut(s) 110, 161, 173, 657, 686, 708, 860, 869
NdeII GATC 2 cut(s) 4, 621
NlaIII CATG 2 cut(s) 487, 862
NmuCI GTSAC 3 cut(s) 66, 320, 479
NsiI ATGCAT 1 cut(s) 817
PaeR7I CTCGAG 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 324
PctI GAATGC 2 cut(s) 702, 835
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 3 cut(s) 295, 376, 503
PflFI GACNNNGTC 1 cut(s) 839
PkrI GCNGC 2 cut(s) 166, 355
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PshBI ATTAAT 1 cut(s) 222
Psp1406I AACGTT 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 572
PspXI VCTCGAGB 1 cut(s) 849
PsyI GACNNNGTC 1 cut(s) 839
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 7 cut(s) 89, 144, 192, 197, 203, 222, 231
SatI GCNGC 2 cut(s) 165, 354
Sau3AI GATC 2 cut(s) 4, 621
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 1 cut(s) 569
SfaNI GCATC 6 cut(s) 85, 582, 667, 704, 709, 739
SfcI CTRYAG 1 cut(s) 764
Sfr274I CTCGAG 1 cut(s) 849
SinI GGWCC 1 cut(s) 572
SlaI CTCGAG 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 230, 849
SmoI CTYRAG 2 cut(s) 230, 849
Sse9I AATT 8 cut(s) 90, 129, 199, 414, 427, 490, 780, 884
SspMI CTAG 2 cut(s) 114, 441
TaaI ACNGT 1 cut(s) 903
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 850
TasI AATT 8 cut(s) 90, 129, 199, 414, 427, 490, 780, 884
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 3 cut(s) 295, 376, 503
Tru1I TTAA 7 cut(s) 89, 144, 192, 197, 203, 222, 231
Tru9I TTAA 7 cut(s) 89, 144, 192, 197, 203, 222, 231
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 3 cut(s) 66, 320, 479
TseI GCWGC 2 cut(s) 164, 353
Tsp45I GTSAC 3 cut(s) 66, 320, 479
TspDTI ATGAA 7 cut(s) 162, 275, 342, 420, 473, 500, 847
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 166
Tth111I GACNNNGTC 1 cut(s) 839
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 572
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 849
XmiI GTMKAC 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 2 cut(s) 114, 441
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.