Rh6CG066400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000244
Physical Location & Seq
Forward (+)
6595504 .. 6595827
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG066400.1

Sequence Viewer

Length: 324 bp
ATGTCTTTTCCCTTTTCGGTTTTACTAACATTAATCCTTTTTTGTTGTTTTGTGGAAGAAACAATTGCTATGGTGGTGTTTGAAATGGCTTCTTCAATCAAAGAAACGGCTTCTAGTATGGTTTCAACAACTTCGAAGAAAGCTAATGTGACGGTTGATGAAGTCTATGAAGAGATGATGACAACACCTGATTTAGAAGAAGACCTTCGTTTGAGAGCAATTGAAGTGTTTGCTAACAATGCGACAAAGTTTCAAATATTGAAGAAAATTTCACTTGAAAAGAAAAGTGAATTTGTTTTGAAGTCAATGCCACGAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.19

Weight (kDa)

4.85

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02550 AT4G02550 AT4G02550 AT4G02550 AT4G02550
fragaria_vesca FvH4_1g20120 FvH4_2g13781 FvH4_4g15662 FvH4_6g32032
malus_domestica MD02G1272200.v1.1 MD04G1174600.v1.1 MD07G1041200.v1.1 MD07G1064000.v1.1
prunus_persica Prupe.1G245200_v2.0.a1 Prupe.1G287900_v2.0.a1 Prupe.2G077600_v2.0.a1 Prupe.2G078000_v2.0.a1 Prupe.3G281200_v2.0.a1 Prupe.4G256700_v2.0.a1 Prupe.5G014200_v2.0.a1 Prupe.5G014400_v2.0.a1 Prupe.5G049300_v2.0.a1 Prupe.5G049400_v2.0.a1 Prupe.6G167700_v2.0.a1 Prupe.7G027800_v2.0.a1
pyrus_communis pycom02g23280 pycom07g02860 pycom07g04940 pycom07g04960 pycom07g04980
rosa_chinensis RchiOBHm_Chr1g0330381 RchiOBHm_Chr2g0139691 RchiOBHm_Chr2g0145201 RchiOBHm_Chr3g0485151 RchiOBHm_Chr4g0405761 RchiOBHm_Chr4g0417571 RchiOBHm_Chr5g0022261 RchiOBHm_Chr5g0053961 RchiOBHm_Chr6g0298071 RchiOBHm_Chr7g0231381
rosa_laevigata RLG00000002919 RLG00000009166 RLG00000013803 RLG00000013816 RLG00000015126 RLG00000017423 RLG00000019811 RLG00000019826 RLG00000028831 RLG00000029802 RLG00000029840 RLG00000029955 RLG00000029956 RLG00000034858
rosa_multiflora Rmu_co8446275.1_g000001 Rmu_sc0000212.1_g000021 Rmu_sc0000945.1_g000025 Rmu_sc0001512.1_g000009 Rmu_sc0003482.1_g000004 Rmu_sc0004039.1_g000001 Rmu_sc0004390.1_g000008 Rmu_sc0004711.1_g000022 Rmu_sc0005887.1_g000001 Rmu_sc0007795.1_g000002 Rmu_sc0008148.1_g000034 Rmu_sc0008927.1_g000001 Rmu_sc0009714.1_g000007 Rmu_sc0009806.1_g000002 Rmu_sc0012995.1_g000005 Rmu_sc0014278.1_g000005 Rmu_sc0023501.1_g000002
rosa_roxburghii Rroxscaffold_2G00105280 Rroxscaffold_2G00111200 Rroxscaffold_2G00117910 Rroxscaffold_3G00235020 Rroxscaffold_5G00350240 Rroxscaffold_5G00381630 Rroxscaffold_6G00403970 Rroxscaffold_7G00158580
rosa_rugosa Rorug01G0012500 Rorug02G0357800 Rorug02G0359000 Rorug02G0359100 Rorug02G0359200 Rorug04G0061200 Rorug04G0162600 Rorug05G0271800 Rorug06G0213500 Rorug06G0213600 Rorug06G0332900 Rorug07G0148200
rosa_samantha Rh1AG259900 Rh1AG410300 Rh2AG397400 Rh2AG397500 Rh2AG409000 Rh2BG187200 Rh2BG417700 Rh2BG419500 Rh2BG460700 Rh2CG384200 Rh2CG384300 Rh2CG395100 Rh2DG065900 Rh2DG428800 Rh3CG301800 Rh3DG242800 Rh4BG141800 Rh4CG022100 Rh5BG548900 Rh5CG571800 Rh6AG328800 Rh6CG021500 Rh6CG066400 Rh6CG237200 Rh6DG021700 Rh6DG063300 Rh7AG131700 Rh7BG051800 Rh7CG385100 Rh7DG025500 Rh7DG025600
rosa_wichuraiana Rw0G007310 Rw0G016860 Rw2G029630 Rw2G033470 Rw2G034500 Rw3G014930 Rw3G019520 Rw4G010080 Rw4G016450 Rw5G023350 Rw5G041160 Rw5G048810 Rw6G006750 Rw6G017100 Rw7G031010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 267, 290
AgsI TTSAA 8 cut(s) 83, 96, 126, 224, 254, 262, 278, 301
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 309
ApoI RAATTY 2 cut(s) 267, 290
AseI ATTAAT 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 204
AsuII TTCGAA 1 cut(s) 134
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 309
Bsp119I TTCGAA 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 134
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 207
CviJI RGCY 3 cut(s) 89, 110, 143
CviKI_1 RGCY 3 cut(s) 89, 110, 143
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
FaiI YATR 3 cut(s) 71, 119, 168
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FspBI CTAG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
LpnPI CCDG 1 cut(s) 201
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 7 cut(s) 68, 84, 148, 182, 209, 212, 274
MfeI CAATTG 2 cut(s) 63, 219
MluCI AATT 4 cut(s) 63, 219, 267, 290
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 32
MunI CAATTG 2 cut(s) 63, 219
MwoI GCNNNNNNNGC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 148
NspV TTCGAA 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 204
PshBI ATTAAT 1 cut(s) 32
SaqAI TTAA 1 cut(s) 32
SetI ASST 3 cut(s) 145, 190, 207
SfuI TTCGAA 1 cut(s) 134
SgeI CNNG 3 cut(s) 126, 200, 287
Sse9I AATT 4 cut(s) 63, 219, 267, 290
SspI AATATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 134
TasI AATT 4 cut(s) 63, 219, 267, 290
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 174, 183
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 2 cut(s) 267, 290
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.